我在尝试使用bookdown编译pdf时遇到了很多问题。 Html和word格式工作得非常好。我正在运行Windows 10 64位。
我安装了最新的MiKTeX完整版。我也试过Basic，它没有解决问题。
这是我的会话信息：
Session info --------------------------------------------------------------------------------------------
setting value
version R version 3.3.2 (2016-10-31)
system x86_64, mingw32
ui RStudio (1.0.143)
language (EN)
collate Spanish_Spain.1252
tz Europe/Paris
date 2017-05-06
Packages ------------------------------------------------------------------------------------------------
package * version date source
backports 1.0.5 2017-01-18 CRAN (R 3.3.2)
base64enc 0.1-3 2015-07-28 CRAN (R 3.3.2)
bitops 1.0-6 2013-08-17 CRAN (R 3.3.2)
bookdown 0.3.14 2017-03-19 Github (rstudio/bookdown@3025188)
caTools 1.17.1 2014-09-10 CRAN (R 3.3.2)
digest 0.6.12 2017-01-27 CRAN (R 3.3.2)
evaluate 0.10 2016-10-11 CRAN (R 3.3.2)
highr 0.6 2016-05-09 CRAN (R 3.3.2)
htmltools 0.3.6 2017-04-28 CRAN (R 3.3.3)
jsonlite 1.4 2017-04-08 CRAN (R 3.3.3)
knitr 1.15.1 2016-11-22 CRAN (R 3.3.2)
magrittr 1.5 2014-11-22 CRAN (R 3.3.2)
markdown 0.8 2017-04-20 CRAN (R 3.3.3)
mime 0.5 2016-07-07 CRAN (R 3.3.2)
Rcpp 0.12.10 2017-03-19 CRAN (R 3.3.2)
rmarkdown 1.5 2017-04-26 CRAN (R 3.3.3)
rprojroot 1.2 2017-01-16 CRAN (R 3.3.2)
stringi 1.1.5 2017-04-07 CRAN (R 3.3.3)
stringr 1.2.0 2017-02-18 CRAN (R 3.3.3)
yaml 2.1.14 2016-11-12 CRAN (R 3.3.2)
这是错误：
> bookdown::render_book("index.Rmd", "bookdown::pdf_document2")
processing file: index.rmd
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|.................................................................| 100%
ordinary text without R code
output file: index.knit.md
processing file: confidential-statement.Rmd
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|.................................................................| 100%
ordinary text without R code
output file: confidential-statement.knit.md
processing file: signature-page.Rmd
|................ | 25%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|................................ | 50%
ordinary text without R code
|................................................. | 75%
label: unnamed-chunk-2 (with options)
List of 2
$ echo : logi FALSE
$ out.width: chr "100%"
|.................................................................| 100%
ordinary text without R code
output file: signature-page.knit.md
processing file: abbreviations.Rmd
|................ | 25%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|................................ | 50%
ordinary text without R code
|................................................. | 75%
label: tab1 (with options)
List of 3
$ echo : logi FALSE
$ message: symbol F
$ warning: symbol F
|.................................................................| 100%
ordinary text without R code
output file: abbreviations.knit.md
processing file: background.Rmd
|................ | 25%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|................................ | 50%
ordinary text without R code
|................................................. | 75%
label: unnamed-chunk-2 (with options)
List of 1
$ echo: logi FALSE
|.................................................................| 100%
inline R code fragments
output file: background.knit.md
processing file: objectives.Rmd
|...................... | 33%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|........................................... | 67%
label: unnamed-chunk-2 (with options)
List of 1
$ echo: logi FALSE
|.................................................................| 100%
inline R code fragments
output file: objectives.knit.md
processing file: data.Rmd
|........... | 17%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|...................... | 33%
ordinary text without R code
|................................ | 50%
label: unnamed-chunk-2 (with options)
List of 1
$ echo: logi FALSE
|........................................... | 67%
inline R code fragments
|...................................................... | 83%
label: tab2 (with options)
List of 3
$ echo : logi FALSE
$ message: symbol F
$ warning: symbol F
|.................................................................| 100%
ordinary text without R code
output file: data.knit.md
processing file: overview.Rmd
|................ | 25%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|................................ | 50%
ordinary text without R code
|................................................. | 75%
label: unnamed-chunk-2 (with options)
List of 1
$ echo: logi FALSE
|.................................................................| 100%
ordinary text without R code
output file: overview.knit.md
processing file: reporting.Rmd
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|.................................................................| 100%
ordinary text without R code
output file: reporting.knit.md
processing file: quality.Rmd
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|.................................................................| 100%
ordinary text without R code
output file: quality.knit.md
processing file: references.Rmd
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|.................................................................| 100%
ordinary text without R code
output file: references.knit.md
processing file: appendix1.Rmd
|................ | 25%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|................................ | 50%
ordinary text without R code
|................................................. | 75%
label: tab3 (with options)
List of 3
$ echo : logi FALSE
$ message: symbol F
$ warning: symbol F
|.................................................................| 100%
ordinary text without R code
output file: appendix1.knit.md
processing file: appendix2.Rmd
|................................ | 50%
label: unnamed-chunk-1 (with options)
List of 2
$ include: logi FALSE
$ cache : logi FALSE
|.................................................................| 100%
ordinary text without R code
output file: appendix2.knit.md
"C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS _main.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output _main.tex --table-of-contents --toc-depth 2 --template "C:\Users\Mario\Documents\R\win-library\3.3\rmarkdown\rmd\latex\default-1.17.0.2.tex" --number-sections --highlight-style tango --latex-engine pdflatex --variable graphics=yes --variable "geometry:margin=1in" --variable tables=yes --standalone
======================================================================
starting package maintenance...
installation directory: C:\Users\Mario\AppData\Roaming\MiKTeX\2.9
package repository: ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/
visiting repository ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/...
repository type: remote package repository
loading lightweight database...
downloading ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/miktex-zzdb1-2.9.tar.lzma...
166037 bytes, 188.54 KB/Sec
lightweight database digest: caad893b956d1cfa62503ece5da1dbab
going to download 324623 bytes
going to install 24 file(s) (1 package(s))
downloading ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/latexmk.tar.lzma...
324623 bytes, 780.82 KB/Sec
extracting files from latexmk.tar.lzma...
======================================================================
Latexmk, John Collins, 19 Jan. 2017. Version 4.52c
Output created: _book/_main.pdf
Error in tools::file_path_as_absolute(output_file) :
file '_book/_main.pdf' does not exist
In addition: Warning messages:
1: running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\latexmk.exe" -v' had status 1
2: The LaTeX package latexmk was not correctly installed.
3: running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\latexmk.exe" -v' had status 1
4: running command '"pdflatex" -halt-on-error -interaction=batchmode "_main.tex"' had status 1
5: running command '"bibtex" "_main.aux"' had status 1
6: running command '"pdflatex" -halt-on-error -interaction=batchmode "_main.tex"' had status 1
7: running command '"pdflatex" -halt-on-error -interaction=batchmode "_main.tex"' had status 1
我真的不明白为什么说latexmk.exe没有正确安装。
它位于以下目录中：C：\ Program Files \ MiKTeX 2.9 \ miktex \ bin \ x64 \ latexmk.exe
另外，当我跑：
bookdown::render_book("index.Rmd", "bookdown::pdf_document2")
2017-05-06 06:41:14,090+0200 INFO latexmk - starting with command line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\latexmk.exe -v
2017-05-06 06:41:14,092+0200 INFO latexmk - running 'initexmf --enable-installer --quiet --update-fndb' to refresh the file name database
2017-05-06 06:41:21,041+0200 INFO latexmk - running 'initexmf --enable-installer --quiet --mklangs' to refresh language.dat
2017-05-06 06:41:21,413+0200 INFO latexmk - starting with command line: latexmk -v
2017-05-06 06:41:21,428+0200 INFO latexmk - installing package latexmk triggered by scripts\latexmk\latexmk.pl
2017-05-06 06:41:22,651+0200 INFO latexmk - mpm: starting package maintenance...
2017-05-06 06:41:22,651+0200 INFO latexmk - mpm: installation directory: C:\Users\Mario\AppData\Roaming\MiKTeX\2.9
2017-05-06 06:41:22,651+0200 INFO latexmk - mpm: package repository: ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/
2017-05-06 06:41:22,651+0200 INFO latexmk - mpm: visiting repository ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/...
2017-05-06 06:41:22,651+0200 INFO latexmk - mpm: repository type: remote package repository
2017-05-06 06:41:22,651+0200 INFO latexmk - mpm: loading lightweight database...
2017-05-06 06:41:22,651+0200 INFO latexmk - mpm: downloading ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/miktex-zzdb1-2.9.tar.lzma...
2017-05-06 06:41:23,513+0200 INFO latexmk - mpm: 166037 bytes, 188.54 KB/Sec
2017-05-06 06:41:23,667+0200 INFO latexmk - mpm: lightweight database digest: caad893b956d1cfa62503ece5da1dbab
2017-05-06 06:41:23,667+0200 INFO latexmk - mpm: going to download 324623 bytes
2017-05-06 06:41:23,667+0200 INFO latexmk - mpm: going to install 24 file(s) (1 package(s))
2017-05-06 06:41:23,667+0200 INFO latexmk - mpm: downloading ftp://mirrors.rit.edu/CTAN/systems/win32/miktex/tm/packages/latexmk.tar.lzma...
2017-05-06 06:41:24,082+0200 INFO latexmk - mpm: 324623 bytes, 780.82 KB/Sec
2017-05-06 06:41:24,082+0200 INFO latexmk - mpm: extracting files from latexmk.tar.lzma...
2017-05-06 06:41:31,696+0200 INFO latexmk - starting with command line: C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\latexmk.exe -v
2017-05-06 06:44:20,358+0200 INFO latexmk - starting with command line: latexmk.exe
2017-05-06 06:45:03,011+0200 INFO latexmk - starting with command line: "C:\Program Files\MiKTeX 2.9\miktex\bin\x64\latexmk.exe"
有任何建议或想法吗？
提前致谢，
马里奥
答案 0 :(得分：2)
虽然我仍然不确定根本原因，但我发现system2('pdflatex', 'foo.tex', stdout = FALSE)在使用OP进行调试时无法正常工作。我在 rmarkdown 程序包on Github中提供了一个修复程序，当system2('pdflatex', 'foo.tex')不起作用时，它基本上会回退到stdout = FALSE。似乎重定向到/dev/null在某些Windows平台上不起作用。