Sparklyr - 无法实例化SessionHiveMetaStoreClient

时间：2017-04-18 16:05:25

标签： r hadoop apache-spark hive sparklyr

当尝试使用sparklyr（0.5.3）库（云中的同一台机器）从R Studio连接到Spark集群（Spark 2.0.1）时，我收到如下错误。 它看起来像是一个md_metastore，无法实例化 我没有hive-site.xml配置文件（不确定这可能是个问题）。

spark.sql.warehouse.dir = file:///usr/lib/spark/spark-2.0.1-bin-hadoop2.6/warehouse

任何想法可能出错？

谢谢，Michal 

library(sparklyr)

# Set up environment variables
Sys.setenv(SPARK_HOME="/usr/lib/spark/spark-2.0.1-bin-hadoop2.6")

config <- spark_config()

sc <- spark_connect(master = "spark://my-ip-address:7077", spark_home=Sys.getenv("SPARK_HOME"),
                    config=config)

iris_tbl <- copy_to(sc, iris, overwrite = TRUE)

记录消息：

Error: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
    at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:258)
    at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:359)
    at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:263)
    at org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
    at org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
    at org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
    at org.apache.spark.sql.hive.HiveSharedState.externalCatalog(HiveSharedState.scala:45)
    at org.apache.spark.sql.hive.HiveSessionState.catalog$lzycompute(HiveSessionState.scala:50)
    at org.apache.spark.sql.hive.HiveSessionState.catalog(HiveSessionState.scala:48)
    at org.apache.spark.sql.hive.HiveSessionState$$anon$1.<init>(HiveSessionState.scala:63)
    at org.apache.spark.sql.hive.HiveSessionState.analyzer$lzycompute(HiveSessionState.scala:63)
    at org.apache.spark.sql.hive.HiveSessionState.analyzer(HiveSessionState.scala:62)
    at org.apache.spark.sql.execution.QueryExecution.assertAnalyzed(QueryExecution.scala:49)
    at org.apache.spark.sql.Dataset$.ofRows(Dataset.scala:64)
    at org.apache.spark.sql.SparkSession.sql(SparkSession.scala:582)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at sparklyr.Invoke$.invoke(invoke.scala:96)
    at sparklyr.StreamHandler$.handleMethodCall(stream.scala:89)
    at sparklyr.StreamHandler$.read(stream.scala:55)
    at sparklyr.BackendHandler.channelRead0(handler.scala:49)
    at sparklyr.BackendHandler.channelRead0(handler.scala:14)
    at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
    at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
    at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
    at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
    at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
    at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
    at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:244)
    at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
    at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
    at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:846)
    at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
    at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
    at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
    at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
    at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
    at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:111)
    at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:137)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
    at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522)
    at org.apache.spark.sql.hive.client.HiveClientImpl.<init>(HiveClientImpl.scala:189)
    ... 46 more
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
    at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
    at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
    at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
    at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
    at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
    at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
    at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
    ... 47 more
Caused by: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
    at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
    ... 53 more
Caused by: javax.jdo.JDOFatalDataStoreException: Unable to open a test connection to the given database. JDBC url = jdbc:derby:;databaseName=metastore_db;create=true, username = APP. Terminating connection pool (set lazyInit to true if you expect to start your database after your app). Original Exception: ------
java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@ec4d331, see the next exception for details.
    at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
    at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
    at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
    at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
    at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
    at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
    at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown Source)
    at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
    at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
    at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
    at java.sql.DriverManager.getConnection(DriverManager.java:571)
    at java.sql.DriverManager.getConnection(DriverManager.java:187)
    at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:361)
    at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
    at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
    at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
    at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
    at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
    at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
    at org.datanucleu

1 个答案:

答案 0 :(得分：0)

感谢Blue Data支持，我终于得到了可行的解决方案 - 这是一个与数据抽头使用相关的bdfs特定错误（dtap协议）。 我所要做的就是在Spark master上编辑文件/usr/lib/spark/spark-2.0.1-bin-hadoop2.6/conf/core-site.xml并删除defaultFS属性：

<property>
      <name>fs.defaultFS</name>
      <value>dtap://TenantStorage/</value>
</property>

然后重启Spark master：

sudo service spark-master restart

同样必须在所有工作节点上完成。

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