Nexus Repository版本3.2.0-01中的OrientDB损坏状态

时间：2017-03-22 12:31:02

标签： orientdb nexus nexus3

我们正在使用Nexus Repository版本3.2.0-01并开始在nexus.log中收到以下错误。 OrientDB已损坏。 Nexus不再开始了。 

2017-03-21 13:00:36,329+0000 INFO  [FelixStartLevel] *SYSTEM org.sonatype.nexus.internal.orient.DatabaseServerImpl - OrientDB version: 2.2.13
2017-03-21 13:00:36,348+0000 INFO  [FelixStartLevel] *SYSTEM com.orientechnologies.orient.server.OServer - OrientDB Server v2.2.13 is starting up...
2017-03-21 13:00:36,355+0000 INFO  [FelixStartLevel] *SYSTEM com.orientechnologies.orient.server.OServer - Databases directory: /c9/setup/apps/nexus/sonatype-work/nexus3/db
2017-03-21 13:00:36,647+0000 WARN  [FelixStartLevel] *SYSTEM com.orientechnologies - Not enough physical memory available for DISKCACHE: 1,873MB (heap=1,161MB direct=2,048MB). Set lower Maximum Heap (-Xmx setting on JVM) and restart OrientDB. Now running with DISKCACHE=256MB
2017-03-21 13:00:36,648+0000 INFO  [FelixStartLevel] *SYSTEM com.orientechnologies - OrientDB config DISKCACHE=256MB (heap=1,161MB direct=2,048MB os=1,873MB)
2017-03-21 13:00:36,735+0000 WARN  [FelixStartLevel] *SYSTEM com.orientechnologies.orient.server.OServer - Found ORIENTDB_ROOT_PASSWORD variable, using this value as root's password
2017-03-21 13:00:36,899+0000 INFO  [FelixStartLevel] *SYSTEM com.orientechnologies.orient.server.handler.OJMXPlugin - JMX plugin installed and active: 

profilerManaged=true
2017-03-21 13:00:36,901+0000 INFO  [FelixStartLevel] *SYSTEM com.orientechnologies.orient.server.OServer - OrientDB Studio available at $ANSI{blue 

http://localhost:2480/studio/index.html}
2017-03-21 13:00:36,902+0000 INFO  [FelixStartLevel] *SYSTEM com.orientechnologies.orient.server.OServer - $ANSI{green:italic OrientDB Server is active} v2.2.13.
2017-03-21 13:00:36,902+0000 INFO  [FelixStartLevel] *SYSTEM org.sonatype.nexus.internal.orient.DatabaseServerImpl - Activated
2017-03-21 13:00:36,904+0000 INFO  [FelixStartLevel] *SYSTEM org.sonatype.nexus.extender.NexusLifecycleManager - Start UPGRADE
2017-03-21 13:00:37,632+0000 ERROR [FelixStartLevel] *SYSTEM org.sonatype.nexus.orient.DatabaseInstanceImpl - Lifecycle operation start failed
com.orientechnologies.orient.core.exception.OSecurityAccessException: User or password not valid for database: 'config'^M
        DB name="config"
        at com.orientechnologies.orient.core.metadata.security.OSecurityShared.authenticate(OSecurityShared.java:237) [na:na]
        at com.orientechnologies.orient.core.metadata.security.OSecurityShared.authenticate(OSecurityShared.java:237) [na:na]
        at com.orientechnologies.orient.core.metadata.security.OSecurityExternal.authenticate(OSecurityExternal.java:62) [na:na]
        at com.orientechnologies.orient.core.metadata.security.OSecurityProxy.authenticate(OSecurityProxy.java:107) [na:na]
        at com.orientechnologies.orient.core.db.document.ODatabaseDocumentTx.open(ODatabaseDocumentTx.java:274) [na:na]
        at org.sonatype.nexus.orient.DatabaseManagerSupport.connect(DatabaseManagerSupport.java:142) [org.sonatype.nexus.orient:3.2.0.01]
        at org.sonatype.nexus.orient.DatabaseInstanceImpl.doStart(DatabaseInstanceImpl.java:56) [na:na]
        at org.sonatype.goodies.lifecycle.LifecycleSupport.start(LifecycleSupport.java:104) [org.sonatype.goodies.lifecycle:2.2.3]
        at org.sonatype.goodies.lifecycle.Lifecycles.start(Lifecycles.java:44) [org.sonatype.goodies.lifecycle:2.2.3]
        at org.sonatype.nexus.orient.DatabaseManagerSupport.createInstance(DatabaseManagerSupport.java:258) [org.sonatype.nexus.orient:3.2.0.01]
        at org.sonatype.nexus.orient.DatabaseManagerSupport.instance(DatabaseManagerSupport.java:232) [org.sonatype.nexus.orient:3.2.0.01]
        at org.sonatype.nexus.internal.orient.ConfigDatabase$ProviderImpl.get(ConfigDatabase.java:61) [org.sonatype.nexus.base:3.2.0.01]
        at org.sonatype.nexus.internal.orient.ConfigDatabase$ProviderImpl.get(ConfigDatabase.java:1) [org.sonatype.nexus.base:3.2.0.01]
        at com.google.inject.internal.ProviderInternalFactory.provision(ProviderInternalFactory.java:81) [com.google.inject:4.1.0]
        at com.google.inject.internal.BoundProviderFactory.provision(BoundProviderFactory.java:72) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProviderInternalFactory$1.call(ProviderInternalFactory.java:65) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProvisionListenerStackCallback$Provision.provision(ProvisionListenerStackCallback.java:115) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProvisionListenerStackCallback$Provision.provision(ProvisionListenerStackCallback.java:133) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProvisionListenerStackCallback.provision(ProvisionListenerStackCallback.java:68) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProviderInternalFactory.circularGet(ProviderInternalFactory.java:63) [com.google.inject:4.1.0]
        at com.google.inject.internal.BoundProviderFactory.get(BoundProviderFactory.java:62) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46) [com.google.inject:4.1.0]
        at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1092) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40) [com.google.inject:4.1.0]
        at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:194) [com.google.inject:4.1.0]
        at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41) [com.google.inject:4.1.0]
        at com.google.inject.internal.InjectorImpl$2$1.call(InjectorImpl.java:1019) [com.google.inject:4.1.0]
        at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1085) [com.google.inject:4.1.0]
        at com.google.inject.internal.InjectorImpl$2.get(InjectorImpl.java:1015) [com.google.inject:4.1.0]
         at org.eclipse.sisu.inject.LazyBeanEntry.getValue(LazyBeanEntry.java:81) [org.eclipse.sisu.inject:0.3.2]
        at org.eclipse.sisu.wire.BeanProviders.firstOf(BeanProviders.java:179) [org.eclipse.sisu.inject:0.3.2]
        at org.eclipse.sisu.wire.PlaceholderBeanProvider.lookup(PlaceholderBeanProvider.java:122) [org.eclipse.sisu.inject:0.3.2]
        at org.eclipse.sisu.wire.PlaceholderBeanProvider.get(PlaceholderBeanProvider.java:90) [org.eclipse.sisu.inject:0.3.2]
        at com.google.inject.internal.ProviderInternalFactory.provision(ProviderInternalFactory.java:81) [com.google.inject:4.1.0]
        at com.google.inject.internal.InternalFactoryToInitializableAdapter.provision(InternalFactoryToInitializableAdapter.java:53) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProviderInternalFactory$1.call(ProviderInternalFactory.java:65) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProvisionListenerStackCallback$Provision.provision(ProvisionListenerStackCallback.java:115) [com.google.inject:4.1.0]
        at org.eclipse.sisu.bean.BeanScheduler$Activator.onProvision(BeanScheduler.java:176) [org.eclipse.sisu.inject:0.3.2]
        at com.google.inject.internal.ProvisionListenerStackCallback$Provision.provision(ProvisionListenerStackCallback.java:126) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProvisionListenerStackCallback.provision(ProvisionListenerStackCallback.java:68) [com.google.inject:4.1.0]
        at com.google.inject.internal.ProviderInternalFactory.circularGet(ProviderInternalFactory.java:63) [com.google.inject:4.1.0]
        at com.google.inject.internal.InternalFactoryToInitializableAdapter.get(InternalFactoryToInitializableAdapter.java:45) [com.google.inject:4.1.0]
        at com.google.inject.internal.InjectorImpl$2$1.call(InjectorImpl.java:1019) [com.google.inject:4.1.0]
        at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1085) [com.google.inject:4.1.0]
        at com.google.inject.internal.InjectorImpl$2.get(InjectorImpl.java:1015) [com.google.inject:4.1.0]
        at org.sonatype.nexus.upgrade.internal.ModelVersionStore.doStart(ModelVersionStore.java:82) [org.sonatype.nexus.upgrade:3.2.0.01]
        at org.sonatype.nexus.common.stateguard.StateGuardLifecycleSupport.start(StateGuardLifecycleSupport.java:67) [org.sonatype.nexus.common:3.2.0.01]
        at org.sonatype.nexus.upgrade.internal.ModelVersionStore$$EnhancerByGuice$$b30c182f.CGLIB$start$5(<generated>) [3.2.0-01:na]
        at org.sonatype.nexus.upgrade.internal.ModelVersionStore$$EnhancerByGuice$$b30c182f$$FastClassByGuice$$94ba58c4.invoke(<generated>) [3.2.0-01:na]
        at com.google.inject.internal.cglib.proxy.$MethodProxy.invokeSuper(MethodProxy.java:228) [com.google.inject:4.1.0]
        at com.google.inject.internal.InterceptorStackCallback$InterceptedMethodInvocation.proceed(InterceptorStackCallback.java:76) [com.google.inject:4.1.0]
        at org.sonatype.nexus.common.stateguard.MethodInvocationAction.run(MethodInvocationAction.java:39) [org.sonatype.nexus.common:3.2.0.01]
        at org.sonatype.nexus.common.stateguard.StateGuard$TransitionImpl.run(StateGuard.java:191) [org.sonatype.nexus.common:3.2.0.01]
        at org.sonatype.nexus.common.stateguard.TransitionsInterceptor.invoke(TransitionsInterceptor.java:56) [org.sonatype.nexus.common:3.2.0.01]
        at com.google.inject.internal.InterceptorStackCallback$InterceptedMethodInvocation.proceed(InterceptorStackCallback.java:77) [com.google.inject:4.1.0]
        at com.google.inject.internal.InterceptorStackCallback.intercept(InterceptorStackCallback.java:55) [com.google.inject:4.1.0]
        at org.sonatype.nexus.upgrade.internal.ModelVersionStore$$EnhancerByGuice$$b30c182f.start(<generated>) [3.2.0-01:na]
        at org.sonatype.nexus.upgrade.internal.UpgradeServiceImpl.doStart(UpgradeServiceImpl.java:80) [org.sonatype.nexus.upgrade:3.2.0.01]
        at org.sonatype.goodies.lifecycle.LifecycleSupport.start(LifecycleSupport.java:104) [org.sonatype.goodies.lifecycle:2.2.3]
        at org.sonatype.nexus.extender.NexusLifecycleManager.startComponent(NexusLifecycleManager.java:154) [org.sonatype.nexus.extender:3.2.0.01]
        at org.sonatype.nexus.extender.NexusLifecycleManager.to(NexusLifecycleManager.java:94) [org.sonatype.nexus.extender:3.2.0.01]
        at org.sonatype.nexus.extender.NexusContextListener.frameworkEvent(NexusContextListener.java:185) [org.sonatype.nexus.extender:3.2.0.01]
        at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1429) [org.apache.felix.framework-5.4.0.jar:na]
        at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:308) [org.apache.felix.framework-5.4.0.jar:na]
        at java.lang.Thread.run(Thread.java:745) [na:1.8.0_121]

根本原因 发现这是因为磁盘空间已满而导致Nexus不正常关闭，导致数据库损坏。 

2017-03-17 07:09:49,480+0000 WARN  [elasticsearch[A82A95AC-5D396A2B-337B8736-5017E8FC-915232E4][local_transport][T#1]] *SYSTEM org.elasticsearch.cluster.action.shard - [A82A95AC-5D396A2B-337B8736-5017E8FC-915232E4] [cab22f445c1892acef64d17ac2da6d0086023e21][0] received shard failed for [cab22f445c1892acef64d17ac2da6d0086023e21][0], node[HBjARpI7RyqqqruVqEJ8Ig], [P], v[11], s[INITIALIZING], a[id=FmxOHS7nQcGNz_93VlTpKg], unassigned_info[[reason=ALLOCATION_FAILED], at[2017-03-17T07:09:49.101Z], details[failed recovery, failure IndexShardRecoveryException[failed to recovery from gateway]; nested: EngineCreationFailureException[failed to recover from translog]; nested: EngineException[failed to recover from translog]; nested: IndexFailedEngineException[Index failed for [component#36e3dec8de528c9b41c5c6ac3b18e3f7]]; nested: NotSerializableExceptionWrapper[No space left on device]; ]], indexUUID [fLN4hdE8QPKH7Pj5RpLtmw], message [engine failure, reason [index]], failure [NotSerializableExceptionWrapper[No space left on device]]
org.elasticsearch.common.io.stream.NotSerializableExceptionWrapper: No space left on device
at sun.nio.ch.FileDispatcherImpl.write0(Native Method) [na:1.8.0_121]
at sun.nio.ch.FileDispatcherImpl.write(FileDispatcherImpl.java:60) [na:1.8.0_121]
at sun.nio.ch.IOUtil.writeFromNativeBuffer(IOUtil.java:93) [na:1.8.0_121]
at sun.nio.ch.IOUtil.write(IOUtil.java:65) [na:1.8.0_121]
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:211) [na:1.8.0_121]
at org.elasticsearch.common.io.Channels.writeToChannel(Channels.java:211) [na:na]
at org.elasticsearch.common.bytes.PagedBytesReference.writeTo(PagedBytesReference.java:132) [na:na]
at org.elasticsearch.index.translog.BufferingTranslogWriter.add(BufferingTranslogWriter.java:57) [na:na]

无备份 我们还没有备份Nexus VM，因此我们无法恢复它。有什么可能的出路 - 重建数据库 - 损害最小。感谢任何帮助。

6 个答案:

答案 0 :(得分：23)

以防万一其他人真的很重要 - 以上对我没有帮助，但json导出/导入一个。

在我的情况下，nexus在官方docker镜像中运行，所以

docker exec -it nexus bash

或者您访问nexus shell 

cd /tmp
/opt/jdk1.8.0_141/bin/java -jar /opt/sonatype/nexus/lib/support/nexus-orient-console.jar

CONNECT plocal:/nexus-data/db/component admin admin

export database component-export
drop database
create database plocal:/nexus-data/db/component
import database component-export.json.gz

在你的情况下，java-path可能会有所不同，我们用来连接/创建数据库的数据路径（nexus数据）也不同。

之后，重启服务和组件数据库应该重新启动并再次运行

答案 1 :(得分：18)

我们遇到类似的问题，Nexus OSS verison 3.2.0-01和OrientDB由于不干净关闭而损坏状态。

在我们的案例中，coruppted存储位于

中的组件

$install-dir/sonatype-work/nexus3/db/component 

2017-04-14 15:09:20,007+0200 ERROR [qtp18266400-74] *UNKNOWN com.google.common.eventbus.EventBus.reentrant - Could not dispatch event AssetUpdatedEvent{metadata=AttachedEntityMetadata{schema=asset, document=asset#18:91856{bucket:#13:3,format:maven2,last_updated:Fri Apr 14 15:09:19 CEST 2017,attributes:[5],component:null,name:org/apache/maven/plugins/maven-jar-plugin/maven-metadata.xml,size:743,content_type:application/xml,blob_ref:default@ECF4439E-D7F184F8-578BAB14-ACFC0FB8-5589B163:3fb95745-4aed-460f-b711-b5f5b74b837c,last_accessed:Fri Apr 14 15:09:19 CEST 2017} v466}, remoteNodeId=null} to subscriber org.sonatype.nexus.repository.maven.internal.group.MavenGroupFacet$$EnhancerByGuice$$a88d7327@83eca7 method [public void org.sonatype.nexus.repository.maven.internal.group.MavenGroupFacet.on(org.sonatype.nexus.repository.storage.AssetEvent)]
com.orientechnologies.orient.core.exception.OStorageException: Error during transaction commit
        DB name="component"
        at com.orientechnologies.orient.core.storage.impl.local.OAbstractPaginatedStorage.makeRollback(OAbstractPaginatedStorage.java:2210) [na:na]
        at com.orientechnologies.orient.core.storage.impl.local.OAbstractPaginatedStorage.commit(OAbstractPaginatedStorage.java:1433) [na:na]
        at com.orientechnologies.orient.core.tx.OTransactionOptimistic.doCommit(OTransactionOptimistic.java:539) [com.orientechnologies.orientdb-core:2.2.13]
        at com.orientechnologies.orient.core.tx.OTransactionOptimistic.commit(OTransactionOptimistic.java:104) [com.orientechnologies.orientdb-core:2.2.13]
        at com.orientechnologies.orient.core.db.document.ODatabaseDocumentTx.commit(ODatabaseDocumentTx.java:2756) [com.orientechnologies.orientdb-core:2.2.13]
        at com.orientechnologies.orient.core.db.document.ODatabaseDocumentTx.commit(ODatabaseDocumentTx.java:2725) [com.orientechnologies.orientdb-core:2.2.13]
        at org.sonatype.nexus.repository.storage.StorageTxImpl.commit(StorageTxImpl.java:172) [org.sonatype.nexus.repository:3.2.0.01]
        at sun.reflect.GeneratedMethodAccessor105.invoke(Unknown Source) [na:na]

我们设法通过以下策略解决了我们的问题

  1. 安排Nexus任务，特别是：

    • 重建Maven存储库元数据。
    • 重建存储库索引。
    • 紧凑的blob商店。

  2. Orient DB操作：

    • 重建索引。
    • 修复数据库。

    3. 根据Nexus支持，您可以使用 Nexus OSS verison 3.2.1-01 访问Orient DB控制台。一切都在解释here。在对数据库应用任何操作之前，请确保正确关闭Nexus应用程序。

    进入Orient DB控制台后，使用

    连接到本地数据库 
    > CONNECT PLOCAL:${your_install_dir}/sonatype-work/nexus3/db/${database} admin admin

    然后执行以下操作：

    > REBUILD INDEX *
> REPAIR DATABASE --fix-graph
> REPAIR DATABASE --fix-links
> REPAIR DATABASE --fix-ridbags
> REPAIR DATABASE --fix-bonsai
> DISCONNECT

    我完全清楚我的答案可能无法解决您的具体问题，但我仍然想给您一些指示，因为您没有任何备份。

答案 2 :(得分：2)

数据库预写日志已损坏。

备份pipeline { agent any stages { stage('Generate script') { steps { script { sh 'sh generate_version.sh new_version.log' } } } stage('Fetch version') { environment { version = sh(returnStdout: true, script: '''sh grep version: ''').trim() } steps { script { sh 'echo "do something: $version"' } } } stage('use the version') { steps { script { sh 'echo $version' } } } } } ，然后从该目录中删除扩展名为$install-dir/sonatype-work/nexus3/db/component的文件。然后再次尝试启动

如果问题仍然存在，请尝试清除“ DB”目录下的所有.wal文件，将解决此问题，

我确实尝试过这种方法，但是它就像魅力一样。

致谢 vinay

答案 3 :(得分：2)

我有同样的错误：

无法使用mode = rw打开本地存储'/ nexus-data / db / config'

，并且在启动nexus控制台（java -jar /opt/sonatype/nexus/lib/support/nexus-orient-console.jar）时出现以下消息：

enter image description here

原因是Nexus内存不足，并在文件夹“ / nexus-data / db / config /”中创建了一些0字节的“ .wal”文件。删除它们后，一切又恢复正常了。

非常感谢yobert https://gist.github.com/marcelmaatkamp/123e8793e07a72a382d8d0e8d66bbd8f

答案 4 :(得分：0)

有了Nexus 3.16，现在有一个任务：  创建维修-从Blob存储中调和组件数据库

超级慢，但是它有助于重新创建仍在磁盘上的意外删除的blobstore。

答案 5 :(得分：0)

删除缓存文件夹（/ opt / sonatype-work / nexus3 / cache）为我解决了这个问题

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