Question

我有一个像这样的.sif文件

NodeA   "phosphorylation"   NodeB
NodeA   "binding"       NodeC
NodeB   "phosphorylation"   NodeC
NodeD   "binding"       NodeC

我需要将其转换为JSON，Cytoscape JS可以使用它来生成使用节点及其关系的图形。

我需要它的格式

[
    {"data":{"id":"n40","weight":53},"position":     
    {"x":50,"y":45},"group":"nodes","removed":false,"selected":false,
    "selectable":true,"locked":false,"grabbable":true,"classes":""},

    {"data":{"id":"n41","weight":23},"position":     
    {"x":150,"y":45},"group":"nodes","removed":false,
    "selected":false,"selectable":true,"locked":false,
    "grabbable":true,"classes":""},

    ..........................

    {"data":{"id":"e129","weight":31,"source":"n65","target":"n58"},
    "position":{},"group":"edges","removed":false,"selected":false,
    "selectable":true,"locked":false,"grabbable":true,"classes":""},

    {"data":{"id":"e131","weight":90,"source":"n53","target":"n43"},
    "position:{},"group":"edges","removed":false,"selected":false,
    "selectable":true,"locked":false,"grabbable":true,"classes":""},
]

Answer 1

你试过SIF.js吗？我在npm发现了它：https://www.npmjs.com/package/sif.js

它与Cytoscape的JSON格式不完全相同，但您可以使用它和.map()条目，以便它们匹配。或者您可以使用the repo中的代码构建自己的解析函数，直接输出Cytoscape format。

您也可以使用Cytoscape desktop software将SIF转换为JSON，但这不能作为JS应用程序的一部分自动生成。

如何将.sif文件转换为json，以便在Cytoscape JS中使用

1 个答案: