Question

基本上我想要编写与代码中引用的id列表匹配的文档行。

nodeIDs.txt：

...有417个对象，

Adherens junction.txt：

...有73行，

4301: AFDN; afadin, adherens junction formation factor 
1496: CTNNA2; catenin alpha 2 
283106: CSNK2A3; casein kinase 2 alpha 3 
2241: FER; FER tyrosine kinase 
60: ACTB; actin beta 
1956: EGFR; epidermal growth factor receptor 
56288: PARD3; par-3 family cell polarity regulator 
10458: BAIAP2; BAI1 associated protein 2 
51176: LEF1; lymphoid enhancer binding factor 1

我试图让程序逐行进行并引用id列表，如果行的开头字符与列表中找到的任何字符匹配，则将该行写入新文档。我正在研究数据集，但我不确定这些是否适用于此。

到目前为止我的代码：

ids = []
with open('nodeIDs.txt', 'r') as n:
    for line in n:
        ids.append(line)
n.close()

# Import data from the pathway file and turn into a list
g = []
with open('Adherens junction.txt', 'r') as a:
    for line in a:
        g.append(line)
a.close()

aj = open('Adherens.txt', 'a')
for line in a:
    if ids[i] in line:
    aj.write(line)
aj.close()

你能帮我解决这个问题吗？

Answer 1

以下是我认为你所做的一些代码。

<强>代码：

# read ids file into a set
with open('file1', 'r') as f:
    # create a set comprehension
    ids = {line.strip() for line in f}

# read the pathway file and turn into a list
with open('file2', 'r') as f:
    # create a list comprehension
    pathways = [line for line in f]

# output matching lines
with open('file3', 'a') as f:

    # loop through each of the pathways
    for pathway in pathways:

        # get the number in front of the ':'
        start_of_line = pathway.split(':', 1)[0]

        # if this is in 'ids' output the line
        if start_of_line.strip() in ids:
            f.write(pathway)

<强>结果：

2241: FER; FER tyrosine kinase 
56288: PARD3; par-3 family cell polarity regulator

<强>文件1：

10000
56288
2241

<强> file2的：

4301: AFDN; afadin, adherens junction formation factor 
1496: CTNNA2; catenin alpha 2 
283106: CSNK2A3; casein kinase 2 alpha 3 
2241: FER; FER tyrosine kinase 
60: ACTB; actin beta 
1956: EGFR; epidermal growth factor receptor 
56288: PARD3; par-3 family cell polarity regulator 
10458: BAIAP2; BAI1 associated protein 2 
51176: LEF1; lymphoid enhancer binding factor 1

什么是集合理解？

此：

# create a set comprehension
ids = {line.strip() for line in f}

与：

相同

# create a set
ids = set()
for line in f:
    ids.add(line.strip())

写入与另一个文件中的字符匹配的行

1 个答案: