pyspark导入csv with timestampFormat选项

时间：2016-12-14 16:15:36

标签： csv apache-spark pyspark

我正在尝试导入时间戳字段的CSV文件，显示为：“12/08/16 13:02:22”

代码：

df = sqlContext.read.format('com.databricks.spark.csv').options(header="false", timestampFormat='MM/dd/yy hh:mm:ss').schema(schema).load('/home/spark/Data/mdi_*.csv')\

但是，我得到一个奇怪的java.lang.NullPointException，如下所示。任何帮助将不胜感激！

由于

微米。

---------------------------------------------------------------------------
Py4JJavaError                             Traceback (most recent call last)
<ipython-input-36-3106d06b6e49> in <module>()
----> 1 df.show()

/home/spark/spark/python/pyspark/sql/dataframe.pyc in show(self, n, truncate)
    285         +---+-----+
    286         """
--> 287         print(self._jdf.showString(n, truncate))
    288 
    289     def __repr__(self):

/home/spark/spark/python/lib/py4j-0.10.3-src.zip/py4j/java_gateway.py in __call__(self, *args)
   1131         answer = self.gateway_client.send_command(command)
   1132         return_value = get_return_value(
-> 1133             answer, self.gateway_client, self.target_id, self.name)
   1134 
   1135         for temp_arg in temp_args:

/home/spark/spark/python/pyspark/sql/utils.pyc in deco(*a, **kw)
     61     def deco(*a, **kw):
     62         try:
---> 63             return f(*a, **kw)
     64         except py4j.protocol.Py4JJavaError as e:
     65             s = e.java_exception.toString()

/home/spark/spark/python/lib/py4j-0.10.3-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
    317                 raise Py4JJavaError(
    318                     "An error occurred while calling {0}{1}{2}.\n".
--> 319                     format(target_id, ".", name), value)
    320             else:
    321                 raise Py4JError(

Py4JJavaError: An error occurred while calling o843.showString.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 16.0 failed 1 times, most recent failure: Lost task 0.0 in stage 16.0 (TID 16, localhost): java.lang.NullPointerException
    at org.apache.spark.sql.catalyst.util.DateTimeUtils$.stringToTime(DateTimeUtils.scala:125)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply$mcJ$sp(CSVInferSchema.scala:272)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272)
    at scala.util.Try.getOrElse(Try.scala:79)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$.castTo(CSVInferSchema.scala:269)
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:116)
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:85)
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:128)
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:127)
    at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
    at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
    at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:128)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91)
    at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
    at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
    at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:370)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:246)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:240)
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803)
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803)
    at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70)
    at org.apache.spark.scheduler.Task.run(Task.scala:86)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
    at java.lang.Thread.run(Thread.java:745)

Driver stacktrace:
    at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1454)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1442)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1441)
    at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1441)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811)
    at scala.Option.foreach(Option.scala:257)
    at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:811)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1667)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1622)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1611)
    at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:632)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1873)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1886)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1899)
    at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:347)
    at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:39)
    at org.apache.spark.sql.Dataset$$anonfun$org$apache$spark$sql$Dataset$$execute$1$1.apply(Dataset.scala:2193)
    at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:57)
    at org.apache.spark.sql.Dataset.withNewExecutionId(Dataset.scala:2546)
    at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$execute$1(Dataset.scala:2192)
    at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collect(Dataset.scala:2199)
    at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:1935)
    at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:1934)
    at org.apache.spark.sql.Dataset.withTypedCallback(Dataset.scala:2576)
    at org.apache.spark.sql.Dataset.head(Dataset.scala:1934)
    at org.apache.spark.sql.Dataset.take(Dataset.scala:2149)
    at org.apache.spark.sql.Dataset.showString(Dataset.scala:239)
    at sun.reflect.GeneratedMethodAccessor72.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:280)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:214)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NullPointerException
    at org.apache.spark.sql.catalyst.util.DateTimeUtils$.stringToTime(DateTimeUtils.scala:125)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply$mcJ$sp(CSVInferSchema.scala:272)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$$anonfun$castTo$6.apply(CSVInferSchema.scala:272)
    at scala.util.Try.getOrElse(Try.scala:79)
    at org.apache.spark.sql.execution.datasources.csv.CSVTypeCast$.castTo(CSVInferSchema.scala:269)
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:116)
    at org.apache.spark.sql.execution.datasources.csv.CSVRelation$$anonfun$csvParser$3.apply(CSVRelation.scala:85)
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:128)
    at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat$$anonfun$buildReader$1$$anonfun$apply$2.apply(CSVFileFormat.scala:127)
    at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
    at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
    at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:128)
    at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91)
    at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
    at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
    at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:370)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:246)
    at org.apache.spark.sql.execution.SparkPlan$$anonfun$4.apply(SparkPlan.scala:240)
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803)
    at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$24.apply(RDD.scala:803)
    at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
    at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
    at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
    at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70)
    at org.apache.spark.scheduler.Task.run(Task.scala:86)
    at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
    ... 1 more

1 个答案:

答案 0 :(得分：1)

你确定它不是dd/MM/yy hh:mm:ss吗？ 您可以尝试手动投射并查看会发生什么，首先在架构中将timestamp指定为StringType，然后：
df =sqlContext.read.format('com.databricks.spark.csv').options(header="false").schema(schema).load('/home/spark/Data/mdi_*.csv').select(timestamp.cast(TimestampType)

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