在R

时间:2016-12-11 17:30:42

标签: r docker shiny dockerfile mxnet

我将使用'mxnet'软件包的闪亮应用程序停靠。经过大量的努力,我得出结论,我需要构建和安装软件包,而不是仅仅通过dmlc repos安装它。下面是我试图构建和安装mxnet的简化dockerfile:

FROM r-base:latest


RUN apt-get update && apt-get install -y \
sudo \
gdebi-core \
pandoc \
pandoc-citeproc \
libcurl4-gnutls-dev \
libcairo2-dev/unstable \
libxt-dev \
libssl-dev

# Download and install shiny server
RUN wget --no-verbose https://s3.amazonaws.com/rstudio-shiny-server-os-   build/ubuntu-12.04/x86_64/VERSION -O "version.txt" && \
VERSION=$(cat version.txt)  && \
wget --no-verbose "https://s3.amazonaws.com/rstudio-shiny-server-os- build/ubuntu-12.04/x86_64/shiny-server-$VERSION-amd64.deb" -O ss-latest.deb && \
gdebi -n ss-latest.deb && \
rm -f version.txt ss-latest.deb

# Here comes the installation of other required packages:
# .......



#*** Here comes the problamatic bit: building Installing mxnet
RUN sudo apt-get update
RUN sudo apt-get install -y build-essential git libatlas-base-dev libopencv-dev

RUN git clone --recursive https://github.com/dmlc/mxnet
RUN cd mxnet; make -j$(nproc)

RUN Rscript -e "install.packages('devtools', repo = 'https://cran.rstudio.com')"

RUN cd R-package

RUN Rscript -e "library('devtools'); library('methods'); options(repos=c(CRAN='https://cran.rstudio.com')); install_deps(dependencies = TRUE)"


RUN cd ..

RUN make rpkg


COPY shiny-server.conf  /etc/shiny-server/shiny-server.conf
COPY /myapp/* /srv/shiny-server/

EXPOSE 80

COPY shiny-server.sh /usr/bin/shiny-server.sh

CMD ["/usr/bin/shiny-server.sh"]

运行之后,我收到一条错误说:

can not cd to R-Package

有任何帮助吗?

1 个答案:

答案 0 :(得分:1)

尝试

RUN cd mxnet; make -j$(nproc)\ && Rscript -e "install.packages('devtools', repo = 'https://cran.rstudio.com')"

您的RUN cd ..将无法达到您所期望的效果,与打开终端,执行cd abc/def以及在/ home / $ USER中的另一个终端执行cd ..相同},你不会在abc。

您应该对RUN命令进行分组,以限制图像中的图层数量,请参阅

https://docs.docker.com/engine/userguide/eng-image/dockerfile_best-practices/

还检查Dockerfile中的WORKDIR指令

https://docs.docker.com/engine/reference/builder/#workdir

您可以通过启动shell

来检查正确完成(或不完成)的操作

docker run -it your_image /bin/bash

然后检查是否存在。