使用R的raster
包,我从文件中获得brick
,带有以下ncdump
标题(我显示一个小示例文件,实际文件要大得多):
dimensions:
lon = 2 ;
lat = 3 ;
time = UNLIMITED ; // (125000 currently)
variables:
float lon(lon) ;
lon:standard_name = "longitude" ;
lon:long_name = "longitude" ;
lon:units = "degrees_east" ;
lon:axis = "X" ;
float lat(lat) ;
lat:standard_name = "latitude" ;
lat:long_name = "latitude" ;
lat:units = "degrees_north" ;
lat:axis = "Y" ;
double time(time) ;
time:standard_name = "time" ;
time:long_name = "Time" ;
time:units = "seconds since 2001-1-1 00:00:00" ;
time:calendar = "standard" ;
time:axis = "T" ;
short por(time, lat, lon) ;
por:_FillValue = 0s ;
por:missing_value = 0s ;
在R
:
class : RasterBrick
dimensions : 3, 2, 6, 125000 (nrow, ncol, ncell, nlayers)
resolution : 0.008999825, 0.009000778 (x, y)
extent : 6.4955, 6.5135, 44.0955, 44.1225 (xmin, xmax, ymin, ymax)
coord. ref. : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0
data source : /home/clima-archive/afantini/chym/chym_output/test.nc
names : X0, X3600, X7200, X10800, X14400, X18000, X21600, X25200, X28800, X32400, X36000, X39600, X43200, X46800, X50400, ...
z-value : 0, 449996400 (min, max)
varname : por
但是,为了更快地访问和更高压缩,已经交换了两个文件维度,因此对于我们需要的那种使用,分块更好。所以文件将是这样的(link to download the 1MB file):
dimensions:
lon = UNLIMITED ; // (2 currently)
lat = 3 ;
time = 125000 ;
variables:
float lon(lon) ;
lon:standard_name = "longitude" ;
lon:long_name = "longitude" ;
lon:units = "degrees_east" ;
lon:axis = "X" ;
float lat(lat) ;
lat:standard_name = "latitude" ;
lat:long_name = "latitude" ;
lat:units = "degrees_north" ;
lat:axis = "Y" ;
double time(time) ;
time:standard_name = "time" ;
time:long_name = "Time" ;
time:units = "seconds since 2001-1-1 00:00:00" ;
time:calendar = "standard" ;
time:axis = "T" ;
short por(lon, lat, time) ;
por:_FillValue = 0s ;
por:missing_value = 0s ;
在R
:
class : RasterBrick
dimensions : 3, 125000, 375000, 2 (nrow, ncol, ncell, nlayers)
resolution : 3600, 0.009000778 (x, y)
extent : -1800, 449998200, 44.0955, 44.1225 (xmin, xmax, ymin, ymax)
coord. ref. : NA
data source : /home/clima-archive/afantini/chym/chym_output/test_swapped.nc
names : X6.5, X6.50899982452393
degrees_east: 6.5, 6.50899982452393
varname : por
正如您所看到的那样,文件打开就好像列数为125000.我想将列数与层数交换,而不读取所有数据。我想从光栅手册中我应该使用layer
或lvar
,因为:
图层:整数。要在多层文件中使用的图层(变量), 或从RasterStack / Brick或提取的层 SpatialPixelsDataFrame或SpatialGridDataFrame。一个空的 如果'layer = 0'
,则返回RasterLayer(无关联值).......
'lvar':整数> 0(默认= 3)。选择'级别变量' (第三维变量),如果文件有4个维度 (例如深度而不是时间)
但这似乎不起作用,例如layer="time"
,因为它什么都没改变。
我该怎么做?
答案 0 :(得分:3)
如果您不打算在打开/阅读后重塑,我认为您可以使用ncdf4
库读取变量中的数据然后转置它。类似的东西:
nc <- nc_open(*your_nc_file*)
data <- ncvar_get(nc, por) # "por" is the name of your variable, right ?
data_new <- aperm(data, c(1,3,2)) # "transpose" the matrix
可能的问题可能是data_new
不再是raster*
对象,但您可以轻松地从中重新创建一个{{1}}对象。
HTH,
洛伦佐