我已经构建并安装了parmetis-4.0.3并编写了一个简单的代码来测试它。但是我收到一个错误说:"未定义引用`ParMETIS_V3_PartMeshKway'"
我的C代码是:
#include <iostream>
#include "parmetis.h"
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
int np = 3; int ne = 36;
idx_t *elmdist = new idx_t[np+1]; for (int i=0; i<np+1; i++) {elmdist[i] = (i-1)*ne/np;} elmdist[np] = ne;
idx_t *eptr = new idx_t[ne+1]; for (int i=0; i<ne+1; i++) {eptr[i] = (i-1)*3;}
idx_t eind_[] = {13, 14, 15,
13, 16, 17,
2, 17, 6,
4, 15, 10,
13, 15, 19,
13, 17, 18,
13, 19, 16,
13, 18, 14,
1, 5, 16,
3, 9, 14,
7, 8, 18,
11, 12, 19,
1, 20, 12,
3, 21, 8,
7, 18, 23,
11, 19, 22,
2, 23, 17,
4, 22, 15,
14, 25, 15,
16, 24, 17,
15, 22, 19,
17, 23, 18,
1, 16, 20,
3, 14, 21,
5, 24, 16,
9, 25, 14,
16, 19, 20,
14, 18, 21,
6, 17, 24,
10, 15, 25,
5, 6, 24,
9, 10, 25,
8, 21, 18,
12, 20, 19,
2, 7, 23,
4, 11, 22};
idx_t *eind = eind_;
idx_t *elmwgt = NULL;
idx_t wgtflag_[] = {0};
idx_t *wgtflag = wgtflag_;
idx_t numflag_[] = {0};
idx_t *numflag = numflag_;
idx_t ncon_[] = {1};
idx_t *ncon = ncon_;
idx_t ncommonnodes_[] = {2};
idx_t *ncommonnodes = ncommonnodes_;
idx_t nparts_[] = {np};
idx_t *nparts = nparts_;
real_t *tpwgts = new real_t[np*ncon[0]]; for(int i=0; i<np*ncon[0]; i++) {tpwgts[i] = 1.0/np;}
real_t ubvec_[] = {1.05};
real_t *ubvec = ubvec_;
idx_t options_[] ={0, 0, 0};
idx_t *options =options_;
idx_t *edgecut=NULL;
idx_t *part=NULL;
MPI_Comm *comm=NULL;
ParMETIS_V3_PartMeshKway(elmdist, eptr, eind, elmwgt, wgtflag, numflag, ncon, ncommonnodes, nparts, tpwgts, ubvec, options, edgecut, part, comm);
MPI_Finalize();
return 0;
}
我的makefile是:
ParMETIS_INCLUDES = ${cpp_libraries}/parmetis/include
METIS_INCLUDES = ${cpp_libraries}/metis/include
INCLUDES = -I${ParMETIS_INCLUDES} -I${METIS_INCLUDES}
LFLAGS = -L${ParMETIS_INCLUDES} -L${METIS_INCLUDES}
CC = mpic++
parmetis_try: parmetis_try.cpp
${CC} -Wall -g $(INCLUDES) -o parmetis_try.out parmetis_try.cpp $(LFLAGS)
clean:
rm *.o *.out *~
如果我在命令行中键入make
,它将显示以下错误消息:
mpic++ -Wall -g -I/l/yangsong/Library/parmetis/include -I/l/yangsong/Library/metis/include -o parmetis_try.out parmetis_try.cpp -L/l/yangsong/Library/parmetis/include -L/l/yangsong/Library/metis/include
/tmp/ccmrGrI2.o: In function `main':
/l/yangsong/Simulation/VTURP/depreciated/parmetis_try/parmetis_try.cpp:85: undefined reference to `ParMETIS_V3_PartMeshKway'
collect2: error: ld returned 1 exit status
make: *** [parmetis_try] Error 1
起初我想也许我没有成功安装parmetis。但是如果我在ParMETIS_V3_PartMeshKway
文件中注释掉.cpp
的行,它将成功编译。另外,如果我输入nm parmetis/lib/libparmetis.so | grep Kwa | grep Mes
,则会显示:
000000000001b570 T libparmetis__CheckInputsPartMeshKway
0000000000013e80 T ParMETIS_V3_PartMeshKway
所以我认为parmetis已成功安装。有没有想过为什么我收到此错误消息?
答案 0 :(得分:2)
我不是编写makefile的专家,但我认为你的错误来自这个文件。如果我是正确的你忘了链接梅蒂斯。此外,-L标志给出了库目录。我想par_metis lib不在include文件夹中。
我用metis自己重建一个makefile,它以这种方式工作:
all: metis
main.o: main.cpp
clang++ -Wall -I/usr/local/include -c main.cpp
metis: main.o
clang++ -Wall main.o -o metis -L/usr/local/lib -lmetis
因为我不是make的专家,而且他们有很多错误来源,所以我更喜欢CMake而不是makefile。在这个post中,我给出了一个cmake示例。使用parmetis库替换metis应该很容易。 我希望这个答案可以帮助你和梅蒂斯好运! :)