循环错误：语法错误接近意外令牌`完成＆＃39;

Question

我是bash脚本新手。我想逐行读取包含表格的文件。在每一行，我想将值分配给变量。这基本上是我的代码格式：

#!/bin/bash

experiment_database="/home/gperron/datasets/ENCODE_tables/final_tables/test_experiment_database.txt"
file_database="/home/gperron/datasets/ENCODE_tables/final_tables/test_file_database.txt"

EXPERIMENT=`cat $experiment_database | head -n $PBS_ARRAYID | tail -n 1 | cut -f1`
echo "EXPERIMENT #$PBS_ARRAYID: $EXPERIMENT"

while IFS= read -r line; do
        echo $file_ID $experiment $target $biological_replicate $technical_replicate $read_number $url $fastq_file $genome
        if [ "$experiment" == "$EXPERIMENT" ]; then
                if [ $biological_replicate == 1 ]; then
                        if [ $technical_replicate == 1 ]; then
                                if [ $read_number == 1 ]; then
                                        ID_111= $file_ID
                                        fastq_111= $fastq_file
                                        url_111= $url
                                        echo "FASTQ file 111 ID: $ID_111"
                                        echo "FASTQ file 111: $fastq_111"
                                        echo "FASTQ file 111 url: $url_111"
                                elif [ $read_number == 2 ]; then
                                        ID_112= $file_ID
                                        fastq_112= $fastq_file
                                        url_112= $url
                                        echo "FASTQ file 112 ID: $ID_112"
                                        echo "FASTQ file 112: $fastq_112"
                                        echo "FASTQ file 112 url: $url_112"
                                fi
                        elif [ $technical_replicate == 2 ]; then
                                if [ $read_number == 1 ]; then
                                        ID_121= $file_ID
                                        fastq_121= $fastq_file
                                        url_121= $url
                                        echo "FASTQ file 121 ID: $ID_121"
                                        echo "FASTQ file 121: $fastq_121"
                                        echo "FASTQ file 121 url: $url_121"
                                elif [ $read_number == 2 ]; then
                                        ID_122= $file_ID
                                        fastq_122= $fastq_file
                                        url_122= $url
                                        echo "FASTQ file 122 ID: $ID_122"
                                        echo "FASTQ file 122: $fastq_122"
                                        echo "FASTQ file 122 url: $url_122"
                                fi
                elif [ $biological_replicate == 2 ]; then
                        if [ $technical_replicate == 1 ]; then
                                if [ $read_number == 1 ]; then
                                        ID_211= $file_ID
                                        fastq_211= $fastq_file
                                        url_211= $url
                                        echo "FASTQ file 211 ID: $ID_211"
                                        echo "FASTQ file 211: $fastq_211"
                                        echo "FASTQ file 211 url: $url_211"
                                elif [ $read_number == 2 ]; then
                                        ID_212= $file_ID
                                        fastq_212= $fastq_file
                                        url_212= $url
                                        echo "FASTQ file 212 ID: $ID_212"
                                        echo "FASTQ file 212: $fastq_212"
                                        echo "FASTQ file 212 url: $url_212"
                                fi
                        elif [ $technical_replicate == 2 ]; then
                                if [ $read_number == 1 ]; then
                                        ID_221= $file_ID
                                        fastq_221= $fastq_file
                                        url_221= $url
                                        echo "FASTQ file 221 ID: $ID_221"
                                        echo "FASTQ file 221: $fastq_221"
                                        echo "FASTQ file 221 url: $url_221"

                                elif [ $read_number == 2 ]; then
                                        ID_222= $file_ID
                                        fastq_222= $fastq_file
                                        url_222= $url
                                        echo "FASTQ file 222 ID: $ID_222"
                                        echo "FASTQ file 222: $fastq_222"
                                        echo "FASTQ file 222 url: $url_222"

                                fi
                        fi
                fi
        fi
done < test_file_database.txt

我收到此错误：＆＃34; while循环错误：语法错误接近意外令牌`done＆＃39; ＆＃34;

知道我的代码有什么问题吗？我曾尝试查看与同一错误相关的其他几个问题，但我无法修复我的代码。谢谢你的帮助！

编辑：这是整个代码。它可能有其他错误（我真的是初学者），但我希望它有所帮助。

<asp:GridView style="direction:rtl; " ShowHeader="False" BorderColor="White" BorderWidth="2px" HeaderStyle-BackColor="#926c3f" HeaderStyle-Font-Bold="false" RowStyle-BorderColor="White" ID="GridView1" runat="server" DataSourceID="XmlDataSource1" AutoGenerateColumns="False" CssClass="auto-style100" OnSelectedIndexChanged="GridView1_SelectedIndexChanged" OnRowCommand="GridView1_SelectedIndexChanged" OnRowCancelingEdit="GridView1_SelectedIndexChanged" OnRowEditing="GridView1_SelectedIndexChanged" AllowSorting="True">
            <Columns>
                <asp:TemplateField HeaderText=" שם משחק" ItemStyle-Width="200px" >
                    <ItemTemplate >
                        <asp:Label ID="NameLabel" runat="server" Text='<%#Server.UrlDecode(XPathBinder.Eval(Container.DataItem, "gameName").ToString())%>'> </asp:Label>
                    </ItemTemplate>
                    <EditItemTemplate>
                    <asp:TextBox ID="nameTB" runat="server" Text='<%#Server.UrlDecode(XPathBinder.Eval(Container.DataItem, "gameName").ToString())%>'> </asp:TextBox>
                </EditItemTemplate>
                </asp:TemplateField>

                <asp:TemplateField HeaderText="קוד משחק" ItemStyle-Width="85px">
                    <ItemTemplate>
                        <asp:Label ID="codeLabel" runat="server" Text='<%#Server.UrlDecode(XPathBinder.Eval(Container.DataItem, "gameCode").ToString())%>'> </asp:Label>
                    </ItemTemplate>
                </asp:TemplateField>

                <asp:TemplateField HeaderText="הגדרות" ItemStyle-Width="70px">
                    <EditItemTemplate>
                    <asp:ImageButton ID="cancelImageButton" runat="server" ImageUrl="~/images/cancel.png" CommandName="cancel" OnClientClick="showWhoIsPublish" />
                    <asp:ImageButton ID="approveImageButton" theItemId='<%#XPathBinder.Eval(Container.DataItem, "@id")%>' runat="server" ImageUrl="~/images/approve.png" CommandName="approve" />
                </EditItemTemplate>
                    <ItemTemplate>
                        <asp:ImageButton  ID="settingsImageButton" runat="server" CssClass="buttons" ImageUrl="~/images/אייקון הגדרות.png" theItemId='<%#XPathBinder.Eval(Container.DataItem, "@id")%>' CommandName="edit" OnClientClick="showWhoIsPublish" />
                    </ItemTemplate>

                </asp:TemplateField>

                <asp:TemplateField HeaderText="עריכה" ItemStyle-Width="70px" >
                    <ItemTemplate>
                        <asp:ImageButton ID="editImageButton" runat="server" CssClass="buttons" ImageUrl="~/images/אייקון עריכה.png" theItemId='<%#XPathBinder.Eval(Container.DataItem, "@id")%>' CommandName="editQ" />
                    </ItemTemplate>
                </asp:TemplateField>

                <asp:TemplateField HeaderText="מחיקה" ItemStyle-Width="70px">
                    <ItemTemplate>
                        <asp:ImageButton ID="deleteImageButton" CssClass="buttons" OnClick="doDelete_Click"  theItemId='<%#XPathBinder.Eval(Container.DataItem, "@id")%>' runat="server" ImageUrl="~/images/אייקון מחיקה.png" CommandName="deleteRow" />
                    </ItemTemplate>
                </asp:TemplateField>

                <asp:TemplateField HeaderText=" הגבלת זמן" ItemStyle-Width="90px" >
                    <EditItemTemplate>
                    <asp:DropDownList ID="DropDownListT"  AppendDataBoundItems="True" runat="server" >
                        <asp:ListItem> 10 שניות</asp:ListItem>
                         <asp:ListItem> 20 שניות</asp:ListItem>
                       <asp:ListItem> 30 שניות</asp:ListItem>
                    <asp:ListItem> 40 שניות</asp:ListItem>
                        <asp:ListItem> 50 שניות</asp:ListItem>
                      <asp:ListItem> 60 שניות</asp:ListItem>
                   </asp:DropDownList>
                         </EditItemTemplate>

                    <ItemTemplate >
                        <asp:Label ID="Time" runat="server" Text='<%#Server.UrlDecode(XPathBinder.Eval(Container.DataItem, "time").ToString())%>'> </asp:Label>
                    </ItemTemplate>

                </asp:TemplateField>

                <asp:TemplateField HeaderText="פרסום" ItemStyle-Width="60px">
                    <ItemTemplate>
                        <asp:CheckBox runat="server" ID="Checkbox1" CssClass="buttons1" theItemId='<%#XPathBinder.Eval(Container.DataItem, "@id")%>' AutoPostBack="True" OnCheckedChanged="PublishYesNo_CheckedChanged" ViewStateMode="Inherit" EnableViewState="True" Checked="False" />
                    </ItemTemplate>
                </asp:TemplateField>
            </Columns>

如果我澄清了什么，请告诉我。

Answer 1

在configureCell1靠近顶部后，$biological_replicate == 1在if [ $technical_replicate == 1 ]; then之后没有fi。见下文。

我想您可能对indirect expansion感兴趣，如下所示。 （可能很笨拙;我自己最近才发现间接扩张。）

elif

我认为这可能会对您的this_id="${biological_replicate}${technical_replicate}${read_number}" # e.g., 111, 112, ... declare "ID_${this_id}"=$file_id # evaluates the left side into, e.g., ID_111, and sets $ID_111=$file_id 链条造成相当大的影响。

上面编辑的代码：

if