我试图运行经过优化的python脚本以使用python 2.7:
#!/usr/bin/env python
import sys,getopt,os
SplitInput_string = """#!/bin/bash
#BSUB -J SplitInput[1-%numSamples%]
#BSUB -o Logs/SplitInput-Out-%I.out
#BSUB -e Logs/SplitInput-Err-%I.err
#BSUB -q week
#BSUB -W 23:58
echo Date: `date`
t1=`date +%s`
sleep ${LSB_JOBINDEX}
python LSFScripts/array_merge.py -r ${LSB_JOBINDEX} -i %input% -o original_reads/
[ $? -eq 0 ] || echo 'JOB FAILURE: $?'
echo Date: `date`
t2=`date +%s`
tdiff=`echo 'scale=3;('$t2'-'$t1')/3600' | bc`
echo 'Total time: '$tdiff' hours'
"""
help_message = "usage example: python setupDirs.py -i /path/to/reads/ -n numberOfSamples"
if __name__ == "__main__":
try:
opts, args = getopt.getopt(sys.argv[1:], 'hi:n:', ["inputdir="])
except:
print help_message
sys.exit(2)
for opt, arg in opts:
if opt in ('-h', '--help'):
print help_message
sys.exit()
elif opt in ('-i', '--inputdir'):
inputdir = arg
if inputdir[-1] != '/':
inputdir += '/'
elif opt in ('-n'):
n = arg
for dir in ['Logs', 'original_reads', 'hashed_reads', 'cluster_vectors', 'read_partitions']:
os.system('mkdir %s' % (dir))
f = open('LSFScripts/SplitInput_ArrayJob.q', 'w')
f.write(SplitInput_string.replace('%numSamples%', n).replace('%input%', inputdir))
f.close()
但我不断收到此错误消息:
line 42, in <module>
f.write(SplitInput_string.replace('%numSamples%', n).replace('%input%', inputdir))
NameError: name 'n' is not defined
任何建议都将不胜感激!
答案 0 :(得分:1)
n
未在所有代码路径中定义。只有在您遵循以下路径时才会定义:
elif opt in ('-n'):
如果您想在之后使用默认值,请在更高的范围(即在for循环之前)定义m
。
n = #default value
for opt, arg in opts:
# ...
如果要解析参数,我强烈建议您使用argparse
包。有一点学习曲线,但您可以非常稳健地生成必要的用法。
答案 1 :(得分:1)
在进入循环之前,您必须为let top = topMostController()
let alertController = UIAlertController(title: "Location pinned", message: "You've successfully pinned this location, good work!", preferredStyle: UIAlertControllerStyle.Alert)
let okAction = UIAlertAction(title: "OK", style: UIAlertActionStyle.Default) {
(result : UIAlertAction) -> Void in
print("OK")
}
alertController.addAction(okAction)
self.presentViewController(myAlert, animated: true, completion: nil)
top.presentViewController(alertController, animated: true, completion: {
_ in
})
分配一个值。
n