Question

// [[Rcpp::depends(RcppParallel)]]
#include <RcppParallel.h>
#include <RcppArmadilloExtensions/sample.h>
// [[Rcpp::depends(RcppArmadillo)]]

using namespace Rcpp;
using namespace RcppArmadillo;
using namespace RcppParallel;
using namespace std;

struct Sum : public Worker
{   
  vector<string> output;

  Sum() {}
  Sum(const Sum& sum, Split) {}

  void operator()(std::size_t begin, std::size_t end) {
    vector<string> states;
    states.push_back("a");
    states.push_back("b");
    states.push_back("c");
    states.push_back("d");

    vector<double> probs;
    probs.push_back(0.3);
    probs.push_back(0.4);
    probs.push_back(0.1);
    probs.push_back(0.2);

    vector<string> rstat = sample(states, 1, false, wrap(probs));
    output.push_back(rstat[0]);

  }

  void join(const Sum& rhs) { 
    for(int i=0;i<rhs.output.size();i++) {
      output.push_back(rhs.output[i]);
    }
  }
};

// [[Rcpp::export]]
CharacterVector parallelVectorSum(int n) {

  Sum sum;

  parallelReduce(0, n, sum);

  return wrap(sum.output);
}

以上代码只是学习RcppParllel的实验。我做了很多搜索，发现我们应该避免使用CharacterVector，NumericVector等数据类型。这就是我使用C++ STL的原因。

输出1

> parallelVectorSum(1)
[1] "b"

输出2

> parallelVectorSum(11)
 [1] "d" "a" "b" "b" "d" "a" "b" "b" "d" "b" "a"

输出3

> parallelVectorSum(111)
Warning: stack imbalance in '.Call', 7 then 6
  [1] "a" "b" "d" "b" "a" "b" "d" "d" "a" "b" "a" "b" "d" "b" "b" "c" "a" "a" "a" "d" "b" "b" "b" "a" "c" "a" "b" "a"
 [29] "a" "b" "b" "d" "a" "b" "c" "b" "b" "d" "d" "b" "b" "a" "b" "a" "d" "b" "b" "a" "a" "a" "b" "b" "a" "a" "b" "d"
 [57] "a" "a" "b" "d" "a" "a" "c" "d" "b" "c" "a" "d" "a" "d" "d" "b" "a" "a" "d" "b" "b" "d" "d" "b" "b" "b" "a" "a"
 [85] "c" "a" "b" "d" "c" "b" "b" "a" "d" "d" "b" "b" "a" "a" "d" "d" "a" "c" "b" "b" "a" "a" "b" "b" "b" "c" "d"

在上一次运行中，我收到了与堆栈不平衡相关的警告，我确信这是因为使用sample RcppArmadillo函数。在sample方法的定义中，我发现正在使用R数据类型。事实上，sample的第四个参数本身就是NumericVector，这是一个问题。

这个问题可以解决什么问题？我是否需要实现自己的sample功能（我不认为这很容易 - 我是初学者）。任何解决方案将不胜感激。请帮忙。

Answer 1

我已经从RcppArmadillo's sample.h移植了代码，仅使用arma::vec。

请参阅：

https://github.com/SMAC-Group/gmwm/blob/f5f132c5a15820643286bb3c19b676b80d8f46c1/src/sampler.cpp

您需要致电的功能是：

arma::vec rsample(const arma::vec &x, const int size, const bool replace, arma::vec prob_ );

唯一的问题是这不适用于std::string，因为arma没有为此定义类型。（我想你可以用template来写它？

使用RcppParallel时堆栈不平衡

1 个答案: