绘制SOM:如何更改颜色?

时间:2016-05-09 08:31:31

标签: r plot colors som self-organizing-maps

我有以下数据集。

> ds
          dataset_clustering.CODICE_DOMANDA  FAT_AZI_MLN IMPORTO_PROGETTO NUM_ADDETTI Modelli Formazione
    22870                             22870 4.855849e-03       0.25386313 0.001403368       0          0
    22893                             22893 3.606493e-04       0.40618102 0.115209837       0          0
    16258                             16258 4.433197e-04       0.58254746 0.140670944       0          0
    14684                             14684 6.189941e-04       0.35717439 0.304330393       0          0
    12873                             12873 2.480110e-05       0.65121413 0.022654370       0          0
    12933                             12933 2.603806e-02       0.02551876 0.017107725       0          1
    12047                             12047 7.130316e-05       0.20094923 0.005012029       0          0
    22880                             22880 1.963420e-05       0.16556291 0.015503876       0          0
    11479                             11479 2.856260e-03       0.57615894 0.786688051       0          1
    20836                             20836 3.089804e-04       0.20640177 0.004611067       0          0
          Investimento Sostituzione CAMPANIA COSTRUZIONI ESITO
    22870            1            0        1           1     B
    22893            1            0        1           1     R
    16258            1            0        1           1     P
    14684            1            0        1           1     P
    12873            1            0        1           1     B
    12933            0            0        1           1     B
    12047            1            0        1           1     R
    22880            1            0        1           1     B
    11479            0            0        1           1     P
    20836            1            0        1           1     B

我想训练一个群集该数据集的SOM:

# Train a SOM
grid_type<-'hexagonal' # 'rectangular'
library(kohonen)
num_rows <- 3
num_cols <- 3
r_length <- 100 # 100 1000 10000 100000
tpsom<-paste(grid_type," (",num_rows,"x",num_cols,")")
set.seed(13)
#-------------------------------------------------------------------
somres <- som(as.matrix(ds[,2:length(colnames(ds))-1]),
              grid=somgrid(ydim=num_rows,xdim=num_cols,grid_type),
              rlen = r_length # default = 100
)
# Create a plot of the som
png("Example.png")
  par(mar=c(5.1,4.1,6.1,2.1))
  plot(somres,
       type = "counts",
       #main=paste("Analisi SOM - ","Numero di input per cella","\n")
       main=paste("Analisi SOM\n","Numero di input per cella","\n",
                  "Mappa: ",tpsom
       )
  )
dev.off()

如果我这样做,我会得到下图: enter image description here

我不喜欢它如何自动设置颜色,因为它似乎违反直觉。我想设置五种颜色,从白色开始变为浅红色,正常红色,深红色,深红色。否则,至少要反转图中的颜色。

我不能使用参数palette.name = etc等。 我该如何修改颜色?如果我使用ggplot,我会松开我绘制som的属性type = "counts"

0 个答案:

没有答案