JNA / BridJ等中的分段错误

时间:2016-02-23 03:33:15

标签: java c++ jna javacpp bridj

我使用JNI,JNA,BridJ和JavaCPP多次重建我的Java / C ++项目,每次遇到随机(不可预测)的分段错误。我已经验证了使用这个库的纯C ++可执行文件永远不会导致分段错误,而在BridJ的情况下,通过显式调用它将其缩小到Java的垃圾收集器。

有人想到这些库正在创建Java端指针对象,当它们被垃圾收集(通过free)时调用deletefinalize而不是处理C ++返回的指针作为借用的参考文献,在本申请中应该如此。

但是我已经尝试了一个额外的测试(下面没有表示):我将API中的每个指针都转换为int64_t(Java中的long)并显式地转换为适当的类型C ++。我仍然看到罕见的段错误。

所以我的问题很广泛:可能导致这个问题的原因是什么?我会接受使用JNA或BridJ的答案,因为我可以轻松地在这两者之间切换。我想我错过了一个基本问题,因为这个问题在我尝试过的所有图书馆中都非常普遍。

具体而言,这是我的JNA版本。我链接到CERN ROOT库。 RootTreeReader.h是:

#ifndef ROOTTREEREADER_H
#define ROOTTREEREADER_H

#include <TFile.h>
#include <TTreeReader.h>
#include <TTreeReaderValue.h>
#include <TTreeReaderArray.h>

using namespace ROOT::Internal;

extern "C" {
  TFile *newFile(const char *fileLocation);
  TTreeReader *newReader(TFile *file, const char *treeLocation);
  bool readerNext(TTreeReader *reader);

  TTreeReaderValueBase *newValue_float(TTreeReader *reader, const char *name);

  float getValue_float(TTreeReaderValueBase *value);
}

#endif // ROOTTREEREADER_H

RootTreeReader.cpp是:

#include <string>

#include "RootTreeReader.h"

TFile *newFile(const char *fileLocation) {
  return TFile::Open(fileLocation);
}

TTreeReader *newReader(TFile *file, const char *treeLocation) {
  return new TTreeReader(treeLocation, file);
}

bool readerNext(TTreeReader *reader) {
  return reader->Next();
}

TTreeReaderValueBase *newValue_float(TTreeReader *reader, const char *name) {
  return new TTreeReaderValue<float>(*reader, name);
}

float getValue_float(TTreeReaderValueBase *value) {
  return *((float*)value->GetAddress());
}

他们的Makefile是

all: RootTreeReader.cpp
    mkdir -p ../../../target/native/linux-x86-64
    g++ RootTreeReader.cpp -o ../../../target/native/linux-x86-64/libRootTreeReader.so \
        -fPIC -shared \
        -Wl,--no-as-needed $(shell root-config --cflags --ldflags --libs) -lTreePlayer

JNAerator生成以下RootTreeReaderLibrary.java:

package org.dianahep.scaroot;
import com.sun.jna.Library;
import com.sun.jna.Native;
import com.sun.jna.NativeLibrary;
import com.sun.jna.Pointer;
import com.sun.jna.PointerType;
/**
 * JNA Wrapper for library <b>RootTreeReader</b><br>
 * This file was autogenerated by <a href="http://jnaerator.googlecode.com/">JNAerator</a>,<br>
 * a tool written by <a href="http://ochafik.com/">Olivier Chafik</a> that <a href="http://code.google.com/p/jnaerator/wiki/CreditsAndLicense">uses a few opensource projects.</a>.<br>
 * For help, please visit <a href="http://nativelibs4java.googlecode.com/">NativeLibs4Java</a> , <a href="http://rococoa.dev.java.net/">Rococoa</a>, or <a href="http://jna.dev.java.net/">JNA</a>.
 */
public interface RootTreeReaderLibrary extends Library {
    public static final String JNA_LIBRARY_NAME = "RootTreeReader";
    public static final NativeLibrary JNA_NATIVE_LIB = NativeLibrary.getInstance(RootTreeReaderLibrary.JNA_LIBRARY_NAME);
    public static final RootTreeReaderLibrary INSTANCE = (RootTreeReaderLibrary)Native.loadLibrary(RootTreeReaderLibrary.JNA_LIBRARY_NAME, RootTreeReaderLibrary.class);
    /**
     * Original signature : <code>TFile* newFile(const char*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:5</i><br>
     * @deprecated use the safer methods {@link #newFile(java.lang.String)} and {@link #newFile(com.sun.jna.Pointer)} instead
     */
    @Deprecated 
    RootTreeReaderLibrary.TFile newFile(Pointer fileLocation);
    /**
     * Original signature : <code>TFile* newFile(const char*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:5</i>
     */
    RootTreeReaderLibrary.TFile newFile(String fileLocation);
    /**
     * Original signature : <code>TTreeReader* newReader(TFile*, const char*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:6</i><br>
     * @deprecated use the safer methods {@link #newReader(org.dianahep.scaroot.RootTreeReaderLibrary.TFile, java.lang.String)} and {@link #newReader(org.dianahep.scaroot.RootTreeReaderLibrary.TFile, com.sun.jna.Pointer)} instead
     */
    @Deprecated 
    RootTreeReaderLibrary.TTreeReader newReader(RootTreeReaderLibrary.TFile file, Pointer treeLocation);
    /**
     * Original signature : <code>TTreeReader* newReader(TFile*, const char*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:6</i>
     */
    RootTreeReaderLibrary.TTreeReader newReader(RootTreeReaderLibrary.TFile file, String treeLocation);
    /**
     * Original signature : <code>bool readerNext(TTreeReader*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:7</i>
     */
    byte readerNext(RootTreeReaderLibrary.TTreeReader reader);
    /**
     * Original signature : <code>TTreeReaderValueBase* newValue_float(TTreeReader*, const char*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:9</i><br>
     * @deprecated use the safer methods {@link #newValue_float(org.dianahep.scaroot.RootTreeReaderLibrary.TTreeReader, java.lang.String)} and {@link #newValue_float(org.dianahep.scaroot.RootTreeReaderLibrary.TTreeReader, com.sun.jna.Pointer)} instead
     */
    @Deprecated 
    RootTreeReaderLibrary.TTreeReaderValueBase newValue_float(RootTreeReaderLibrary.TTreeReader reader, Pointer name);
    /**
     * Original signature : <code>TTreeReaderValueBase* newValue_float(TTreeReader*, const char*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:9</i>
     */
    RootTreeReaderLibrary.TTreeReaderValueBase newValue_float(RootTreeReaderLibrary.TTreeReader reader, String name);
    /**
     * Original signature : <code>float getValue_float(TTreeReaderValueBase*)</code><br>
     * <i>native declaration : src/main/cpp/RootTreeReader.h:11</i>
     */
    float getValue_float(RootTreeReaderLibrary.TTreeReaderValueBase value);
    public static class TFile extends PointerType {
        public TFile(Pointer address) {
            super(address);
        }
        public TFile() {
            super();
        }
    };
    public static class TTreeReader extends PointerType {
        public TTreeReader(Pointer address) {
            super(address);
        }
        public TTreeReader() {
            super();
        }
    };
    public static class TTreeReaderValueBase extends PointerType {
        public TTreeReaderValueBase(Pointer address) {
            super(address);
        }
        public TTreeReaderValueBase() {
            super();
        }
    };
}

我称之为:

Native.setProtected(true)
println("Native.isProtected", Native.isProtected)   // it's true on Linux; I've tried this with and without

val lib = RootTreeReaderLibrary.INSTANCE

println("one")
val file = lib.newFile("TrackResonanceNtuple.root")
println("two")
val reader = lib.newReader(file, "TrackResonanceNtuple/twoMuon")
println("three")
val mass = lib.newValue_float(reader, "mass_mumu")
println("four")
var counter = 0
while (lib.readerNext(reader) > 0) {
  val num = lib.getValue_float(mass)
  println(num)
  counter += 1
  // if (counter % 1000 == 0) {
  //   println("gc start")
  //   System.gc()
  //   println("gc end")
  // }
}
println("five")

在有或没有显式垃圾收集器调用的情况下,它很少 。这个段错误的BridJ版本很少没有,经常带有显式的垃圾收集器调用。

1 个答案:

答案 0 :(得分:4)

快速修复:

export LD_PRELOAD=/path/to/libjsig.so

问题是CERN ROOT尝试为与JDK相同的信号安装处理程序。 Oracle建议预加载libjsig.so,它提供“信号链设施”,以解决这些问题:

https://docs.oracle.com/javase/6/docs/technotes/guides/vm/signal-chaining.html

吉姆编辑:

特别是对于ROOT框架,您可以通过调用

来关闭信号处理
gSystem->ResetSignals();

可以在此ROOT留言板上找到讨论:https://root.cern.ch/phpBB3/viewtopic.php?t=8231