我正在尝试使用自制软件安装R在Mac OS X El Capitan上安装R tiff软件包。使用此帖子R: How to install package tiff on Mac OS X Mavericks?来关注建议。
R-版本：
> version
_
platform x86_64-apple-darwin15.0.0
arch x86_64
os darwin15.0.0
system x86_64, darwin15.0.0
status
major 3
minor 2.2
year 2015
month 08
day 14
svn rev 69053
language R
version.string R version 3.2.2 (2015-08-14)
nickname Fire Safety
> install.packages("tiff", type="source")
Installing package into '/usr/local/lib/R/3.2/site-library'
(as 'lib' is unspecified)
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 28925 100 28925 0 0 168k 0 --:--:-- --:--:-- --:--:-- 168k
* installing *source* package ‘tiff’ ...
** package ‘tiff’ successfully unpacked and MD5 sums checked
** libs
clang -I/usr/local/Cellar/r/3.2.2_1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/opt/openssl/include -fPIC -I/usr/local/opt/libtiff/include -c common.c -o common.o
common.c:121:16: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if (offset < 0 || offset > rj->len) {
~~~~~~ ^ ~
1 warning generated.
clang -I/usr/local/Cellar/r/3.2.2_1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/opt/openssl/include -fPIC -I/usr/local/opt/libtiff/include -c read.c -o read.o
clang -I/usr/local/Cellar/r/3.2.2_1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/opt/openssl/include -fPIC -I/usr/local/opt/libtiff/include -c write.c -o write.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/Cellar/r/3.2.2_1/R.framework/Resources/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/openssl/lib -o tiff.so common.o read.o write.o -L/usr/local/opt/gettext/lib -F/usr/local/Cellar/r/3.2.2_1/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation
installing to /usr/local/lib/R/3.2/site-library/tiff/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/usr/local/lib/R/3.2/site-library/tiff/libs/tiff.so':
dlopen(/usr/local/lib/R/3.2/site-library/tiff/libs/tiff.so, 6): Symbol not found: _TIFFClientOpen
Referenced from: /usr/local/lib/R/3.2/site-library/tiff/libs/tiff.so
Expected in: flat namespace
in /usr/local/lib/R/3.2/site-library/tiff/libs/tiff.so
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/usr/local/lib/R/3.2/site-library/tiff’
Warning in install.packages :
installation of package 'tiff' had non-zero exit status
The downloaded source packages are in
'/private/var/folders/g8/rqv40nhs3zqcntnz_9t9l60w0000gr/T/RtmpJYHafp/downloaded_packages'
最初，我收到了错误＆＃39; tiff.h＆＃39;文件未找到。所以，我修改了〜/ .R / Makevars以包含这些行：
CFLAGS=-I/usr/local/opt/libtiff/include
#LDFLAGS=-L/usr/local/opt/libtiff/lib -llibtiff -llibtiffxx
LDFLAGS=-L/usr/local/opt/libtiff/lib -llibtiff.5 -llibtiffxx.5
安装能够找到tiff.h但是即使在我根据位于文件中的文件尝试了不同的LDFLAGS -l规范之后它也找不到合适的库。 / usr / local / opt / libtiff / lib目录。
brew install libtiff:
Warning: libtiff-4.0.6 already installed
编辑：
> devtools::session_info()
Session info -------------------------------------------------------------
setting value
version R version 3.2.2 (2015-08-14)
system x86_64, darwin15.0.0
ui RStudio (0.99.489)
language (EN)
collate C
tz America/New_York
date 2016-01-07
Packages -----------------------------------------------------------------
package * version date source
BiocInstaller * 1.20.1 2016-01-07 Bioconductor
DBI * 0.3.1 2014-09-24 CRAN (R 3.2.2)
MASS 7.3-45 2015-11-10 CRAN (R 3.2.2)
Matrix * 1.2-3 2015-11-28 CRAN (R 3.2.2)
MatrixModels 0.4-1 2015-08-22 CRAN (R 3.2.2)
R6 2.1.1 2015-08-19 CRAN (R 3.2.2)
RColorBrewer 1.1-2 2014-12-07 CRAN (R 3.2.2)
RSQLite * 1.0.0 2014-10-25 CRAN (R 3.2.2)
Rcpp 0.12.2 2015-11-15 CRAN (R 3.2.2)
SparseM 1.7 2015-08-15 CRAN (R 3.2.2)
assertthat 0.1 2013-12-06 CRAN (R 3.2.2)
car 2.1-1 2015-12-14 CRAN (R 3.2.2)
caret * 6.0-62 2015-11-23 CRAN (R 3.2.2)
chron 2.3-47 2015-06-24 CRAN (R 3.2.2)
codetools 0.2-14 2015-07-15 CRAN (R 3.2.2)
colorspace 1.2-6 2015-03-11 CRAN (R 3.2.2)
devtools 1.9.1 2015-09-11 CRAN (R 3.2.2)
digest 0.6.8 2014-12-31 CRAN (R 3.2.2)
doBy * 4.5-14 2015-12-29 CRAN (R 3.2.2)
doMC * 1.3.4 2015-10-13 CRAN (R 3.2.2)
dplyr * 0.4.3 2015-09-01 CRAN (R 3.2.2)
foreach * 1.4.3 2015-10-13 CRAN (R 3.2.2)
formatR 1.2.1 2015-09-18 CRAN (R 3.2.2)
gdata * 2.17.0 2015-07-04 CRAN (R 3.2.2)
ggplot2 * 2.0.0 2015-12-18 CRAN (R 3.2.2)
glmnet * 2.0-2 2015-04-12 CRAN (R 3.2.2)
gsubfn * 0.6-6 2014-08-27 CRAN (R 3.2.2)
gtable 0.1.2 2012-12-05 CRAN (R 3.2.2)
gtools 3.5.0 2015-05-29 CRAN (R 3.2.2)
htmltools 0.3 2015-12-29 CRAN (R 3.2.2)
iterators * 1.0.8 2015-10-13 CRAN (R 3.2.2)
knitr 1.11 2015-08-14 CRAN (R 3.2.2)
labeling 0.3 2014-08-23 CRAN (R 3.2.2)
lattice * 0.20-33 2015-07-14 CRAN (R 3.2.2)
lazyeval * 0.1.10 2015-01-02 CRAN (R 3.2.2)
lme4 1.1-10 2015-10-06 CRAN (R 3.2.2)
lpSolve 5.6.13 2015-09-19 CRAN (R 3.2.2)
magrittr 1.5 2014-11-22 CRAN (R 3.2.2)
memoise 0.2.1 2014-04-22 CRAN (R 3.2.2)
mgcv 1.8-10 2015-12-12 CRAN (R 3.2.2)
minqa 1.2.4 2014-10-09 CRAN (R 3.2.2)
munsell 0.4.2 2013-07-11 CRAN (R 3.2.2)
nlme 3.1-122 2015-08-19 CRAN (R 3.2.2)
nloptr 1.0.4 2014-08-04 CRAN (R 3.2.2)
nnet * 7.3-11 2015-08-30 CRAN (R 3.2.2)
pbkrtest 0.4-4 2015-12-12 CRAN (R 3.2.2)
plyr * 1.8.3 2015-06-12 CRAN (R 3.2.2)
proto * 0.3-10 2012-12-22 CRAN (R 3.2.2)
quantreg 5.19 2015-08-31 CRAN (R 3.2.2)
reshape2 * 1.4.1 2014-12-06 CRAN (R 3.2.2)
rmarkdown 0.9.2 2016-01-01 CRAN (R 3.2.2)
rpart * 4.1-10 2015-06-29 CRAN (R 3.2.2)
rpart.plot * 1.5.3 2015-10-01 CRAN (R 3.2.2)
sampling * 2.7 2015-07-01 CRAN (R 3.2.2)
scales 0.3.0 2015-08-25 CRAN (R 3.2.2)
sqldf * 0.4-10 2014-11-07 CRAN (R 3.2.2)
stringi 1.0-1 2015-10-22 CRAN (R 3.2.2)
stringr * 1.0.0 2015-04-30 CRAN (R 3.2.2)
survival * 2.38-3 2015-07-02 CRAN (R 3.2.2)
tidyr * 0.3.1 2015-09-10 CRAN (R 3.2.2)
yaml 2.1.13 2014-06-12 CRAN (R 3.2.2)
我还能尝试其他什么吗？
提前致谢