我有一个Fortran子例程,我从其他人的Fortran程序转换而来。我想通过R的.Fortran
函数来调用它。当我从Fortan程序中调用它时,子程序(立即)工作,但当我尝试从R调用它时,没有任何反应(事实上,当我输入这个时,R仍在运行这个子程序)。
这是Fortran程序(也包含子程序):
PROGRAM blep
integer a
real(4) b, c, d
b = 0.9
c = 0.1
d = 0.99
a = 0
call midpss(b, c, d, a)
4 format ('Calculated sample size is ',i6)
print 4, a
end
subroutine midpss(w, x, y, numbr)
c THIS IS TAKEN FROM "fosgate_original_working.f" AND THEN CONVERTED
real(8) probA,probB,part1,part2,part3,part4
real(8) totprA,totprB,factt, resp
integer numbr
c character resp
1 format ('Enter proportion ',$)
2 format ('Enter error limit ',$)
3 format ('Enter confidence level ',$)
4 format ('Calculated sample size is ',i6)
5 format ('Exact mid-P with ',f7.5,' 2-tail probability')
6 format ('Sorry, unable to mathmatically solve this problem.')
7 format ('Reported sample size is not accuarate.')
8 format ('Enter q to quit ',$)
9 format ('Actual limits for distribution ',f5.3,' - ',f5.3)
print *, 'Exact sampleroportions'
print *, 'Using Mid-P methods'
print *, 'Geoff Fosgate DVM PhD'
print *, 'College of Veterinary Medicine'
print *, 'Texas A&M University'
print *
10 prop1 = w
range = x
conlev = y
c Convert proportions less than 0.5 for algorithm
if (prop1 .lt. 0.5) then
prop = 1 - prop1
nprop = 1
else
prop = prop1
nprop = 0
end if
slimit = max ((prop - range) , 0.0001)
supper = min ((prop + range) , 0.9999)
c Probabilities cannot be calculated for p=0 and p=1
alpha = (1 - conlev)
if (alpha .gt. 1.0) go to 10
if (alpha .lt. 0.0) go to 10
if (prop .gt. 1.0) go to 10
if (prop .lt. 0.0) go to 10
numbr = (1 / (1 - prop)) - 1
c Define and initialize variables
c Note names of variables based on Fortran 77 rules
c Starting sample size is based on estimated proportion
c Resulting sample size must be large enough to obtain this proportion
100 numbr = numbr + 1
numx = (numbr * prop) + 0.001
c This is the number of binomial "successes" resulting in the proportion
if (numx .eq. numbr) go to 100
if (numx .lt. 1) go to 100
totprA = slimit**numbr
totprB = supper**numbr
do 130 loop1 = numx, (numbr - 1)
c Must initialize variables within loop
factt = 1.0
probA = 0.0
probB = 0.0
part1 = 0.0
part2 = 0.0
part3 = 0.0
part4 = 0.0
c Start loop to calculate factorial component of binomial probability
c Note that complete factorial calculations not necessary due to cancellations
do 110 loop2 = (loop1 + 1) , numbr
factt = factt * (loop2) / (numbr - (loop2 - 1))
110 continue
c Calculate probability for this particular number of successes
c Total probability is a running total
c Note that real variables must have high precision and be comprised
c of multiple bytes because factorial component can be very large
c and exponentiated component can be very small
c Program will fail if any component is recognized as zero or infinity
part1 = slimit**loop1
part2 = (1.0-slimit)**(numbr-loop1)
part3 = supper**loop1
part4 = (1.0-supper)**(numbr-loop1)
if (part1 .eq. 0.0) part1 = 1.0D-307
if (part2 .eq. 0.0) part2 = 1.0D-307
if (part3 .eq. 0.0) part3 = 1.0D-307
if (part4 .eq. 0.0) part4 = 1.0D-307
if (factt .gt. 1.0D308) factt = 1.0D308
probA = part1 * part2 * factt
probB = part3 * part4 * factt
if (loop1 .eq. numx) then
totprA = totprA + (0.5 * probA)
totprB = totprB + (0.5 * probB)
else
totprA = totprA + probA
totprB = totprB + probB
end if
c THIS IS ERROR HANDLING. INSTEAD OF PRINTING, SET NUMBR = -1
c *****************************************************************
if (probA .eq. 0.0) then
c print 6
c print 7
c print *
c go to 150
numbr = -1
end if
if (probB .eq. 0.0) then
c print 6
c print 7
c print *
c go to 150
numbr = -1
end if
c *****************************************************************
130 continue
140 if ((totprA + (1 - totprB)) .gt. alpha) go to 100
c go to beginning and increase sample size by 1 if have not
c reached specified level of confidence
c I.E. IF INPUT PROPORTION IS LESS THAN 0.5
c (I DONT THINK THIS IS NECESSARY -- IT JUST PRINTS THE RESULTS)
c150 if (nprop .eq. 1) then
c print 4,numbr
c print 9, (1-supper),(1-slimit)
c else
c print 4,numbr
c print 9, slimit,supper
c end if
c DO WE NEED THIS PART????
c *****************************************************************
c if (totprA+(1-totprB) .lt. alpha) print 5,(totprA+(1-totprB))
c print *
c print 8
c result = resp
c print *
c if (resp .ne. 'q') go to 10
c print *
c print *
998 return
999 end
(很抱歉我将原始程序转换为子程序时留下的评论。)
该程序名为midpss1_prog.f
,子程序名为midpss1.f
我通过执行以下操作编译并调用该程序:
C:\Users\panterasBox>gfortran midpss1_prog.f
C:\Users\panterasBox>a.exe
Exact sampleroportions
Using Mid-P methods
Geoff Fosgate DVM PhD
College of Veterinary Medicine
Texas A&M University
Calculated sample size is 80
C:\Users\panterasBox>
这工作得很好!
当我调用子程序时,我会执行以下操作:
在命令行中,我称之为:
C:\Users\panterasBox>R CMD SHLIB midpss1.f
gfortran -m64 -O2 -mtune=core2 -c midpss1.f -o midpss1.o
gcc -m64 -shared -s -static-libgcc -o midpss1.dll tmp.def midpss1.o -Ld:/RCompil
e/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/li
b -lgfortran -LC:/Users/panterasBox/Documents/R/R-3.2.2/bin/x64 -lR
然后,我进入R终端并执行此操作:
> setwd("C:/Users/panterasBox")
> dyn.load("midpss1.dll")
> is.loaded("midpss")
[1] TRUE
> .Fortran("midpss", w=as.numeric(0.9), x=as.numeric(0.1), y=as.numeric(0.90), numbr=as.integer(0))
最后一次调用.Fortran
永远不会返回任何内容。它只是卡住了......
非常感谢任何帮助弄清楚这里发生了什么,谢谢。
答案 0 :(得分:4)
R似乎是将浮点数作为双精度发送到Fortran子程序,因此我们可能需要相应地声明相应的伪参数。由于您的程序在子例程的顶部没有implicit none
,因此伪参数w
,x
和y
被隐式地视为单精度,使参数类型不一致R和Fortran之间(因此导致挂起)。要解决这个问题,只需明确声明它们(这里我们假设real(8)
对应于R中的双精度):
subroutine midpss(w, x, y, numbr)
real(8) :: w, x, y !<--- insert this line
!! double precision :: w, x, y !<--- or this line (but not both)
!! No need to modify the remaining part...
....
然后我们获得预期的结果(在Linux x86_64上):
> .Fortran("midpss", w=as.numeric(0.9), x=as.numeric(0.1), y=as.numeric(0.99), numbr=as.integer(0))
Exact sampleroportions
Using Mid-P methods
Geoff Fosgate DVM PhD
College of Veterinary Medicine
Texas A&M University
$w
[1] 0.9
$x
[1] 0.1
$y
[1] 0.99
$numbr
[1] 80
顺便说一下,使用implicit none
(反复建议)可以避免这种问题,因为所有变量都需要明确声明,例如:
subroutine midpss (w, x, y, numbr)
implicit none
real(8) :: w, x, y
real(8) :: prop, prop1, range, conlev, slimit, supper, alpha
integer :: loop1, loop2, numx, nprop
...