Question

我已经将postgres作为数据库安装，然后在Ubuntu 14.04中安装了iRODS。然后我开始配置

sudo /var/lib/irods/packaging/setup_irods.sh

在配置阶段之后，当iRODS开始更新时，前4个步骤顺利进行

Stopping iRODS server...

-----------------------------
Running irods_setup.pl...

Step 1 of 4:  Configuring database user...
    Updating user's .pgpass...
        Skipped.  File already uptodate.

Step 2 of 4:  Creating database and tables...
    Checking whether iCAT database exists...
        [mydb] on [localhost] found.
    Updating user's .odbc.ini...
    Creating iCAT tables...
        Skipped.  Tables already created.
    Testing database communications...

Step 3 of 4:  Configuring iRODS server...
    Updating /etc/irods/server_config.json...
    Updating /etc/irods/database_config.json...

Step 4 of 4:  Configuring iRODS user and starting server...
    Updating iRODS user's ~/.irods/irods_environment.json...
    Starting iRODS server...

但最后我收到此错误

Could not start iRODS server.
    Starting iRODS server...
Traceback (most recent call last):
  File "/var/lib/irods/iRODS/scripts/python/get_db_schema_version.py", line 77, in <module>
    current_schema_version = get_current_schema_version(cfg)
  File "/var/lib/irods/iRODS/scripts/python/get_db_schema_version.py", line 61, in get_current_schema_version
    'get_current_schema_version: failed to find result line for schema_version\n\n{}'.format(format_cmd_result(result)))
RuntimeError: get_current_schema_version: failed to find result line for schema_version


return code: [0]
stdout:

stderr:
ERROR:  relation "r_grid_configuration" does not exist
LINE 1: ...option_value                                 from R_GRID_CON...
                                                             ^

Confirming catalog_schema_version... Success
Validating [/var/lib/irods/.irods/irods_environment.json]... Success
Validating [/etc/irods/server_config.json]... Success
Validating [/etc/irods/hosts_config.json]... Success
Validating [/etc/irods/host_access_control_config.json]... Success
Validating [/etc/irods/database_config.json]... Success
(1) Waiting for process bound to port 5432 ... [-]
(2) Waiting for process bound to port 5432 ... [-]
(4) Waiting for process bound to port 5432 ... [-]
Port 5432 In Use ... Not Starting iRODS Server


Install problem:
    Cannot start iRODS server.
Found 0 processes:
        There are no iRODS servers running.

Abort.

你对出了什么问题有任何想法吗？

Answer 1

因为我没有足够的声誉来发表评论：

您使用的是哪个版本的iRODS？

输出的这一部分：

    Creating iCAT tables...
        Skipped.  Tables already created.

结合这部分：

ERROR:  relation "r_grid_configuration" does not exist

建议设置之前运行，但只是部分完成，使系统处于损坏状态。我建议从头开始重新安装，其中包括：

卸载iRODS icat和db插件包：
- sudo dpkg -P irods-icat irods-database-plugin-postgres
- 注意：请务必使用-P，以便从dpkg的数据库中删除配置文件。
删除并重新制作数据库
删除以下目录：
- sudo rm -rf /tmp/irods /etc/irods /var/lib/irods
重新安装软件包并运行sudo /var/lib/irods/packaging/setup_irods.sh

输出的这一部分：

(1) Waiting for process bound to port 5432 ... [-]
(2) Waiting for process bound to port 5432 ... [-]
(4) Waiting for process bound to port 5432 ... [-]
Port 5432 In Use ... Not Starting iRODS Server

建议您使用端口5432作为iRODS服务器端口。这将与默认的Postgres端口冲突。我建议使用1247的默认iRODS服务器端口。在设置期间查询此值为：

iRODS server's port [1247]:

并记录在/etc/irods/server_config.json条目下的zone_port。

iRODS-聊天：

在iRODS-Chat google group上继续此操作可能会更容易。修复安装可能需要来回通信，这可能与标准stackoverflow使用不一致。

iRODS配置 - 无法启动iRODS服务器

1 个答案:

输出的这一部分：

输出的这一部分：

iRODS-聊天：