如何计算我的子集数据矩阵的T检验和F检验?

时间:2015-11-16 19:23:26

标签: r matrix subset

我是R的新手,如果我犯了任何错误或错误,我会道歉。

下面是我使用的代码,我的数据集的一个示例,以及我的输出结果,共有503行乘7列。从这个子集数据矩阵,我想知道如何确定血清素和非血清素之间的变异系数(CV)是否存在显着差异,列为" Y"和" N"分别?

最终我想测试纬度与" Y"的CV之间是否存在相关性。和" N",并确定两者之间是否存在显着差异。如果有人可以帮助一个初出茅庐的R用户,我将非常感激!

#Example Data#
    SPP SEROTINOUS  LATITUDE    LONGITUDE   Y00 Y01 Y02 Y03 Y04 Y05 Y06 Y07 Y08 Y09 Y10 Y11 Y12 Y13 Y14 Y15 Y16 Y17 Y18 Y19 Y20 Y21 Y22 Y23 Y24 Y25 Y26 Y27 Y28 Y29 Y30 Y31 Y32 Y33 Y34 Y35 Y36 Y37 Y38 Y39 Y40 Y41 Y42 Y43 Y44 Y45 Y46 Y47 Y48 Y49 Y50 Y51 Y52 Y53 Y54 Y55 Y56 Y57 Y58 Y59 Y60 Y61 Y62 Y63 Y64 Y65 Y66 Y67 Y68 Y69 Y70 Y71 Y72 Y73 Y74 Y75 Y76 Y77 Y78 Y79 Y80 Y81 Y82 Y83 Y84 Y85 Y86 Y87 Y88 Y89 Y90 Y91 Y92 Y93
1   ABIES           N   53.00   122.00  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    4.2 0.0 1.1 0.0 0.0 1.1 0.0 3.3 0.0 3.3 0.0 1.0 2.3 1.0 1.0 0.0 3.0 0.0 0.0 1.0 3.3 0.0 0.0 3.6 4.3 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
2   ABIES AMABILIS  N   48.40   122.00  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    15.0    10.0    0.0 0.0 4.0 0.0 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
3   ABIES AMABILIS  N   48.40   122.00  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    0.0 0.0 31.0    0.0 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
4   ABIES AMABILIS  N   48.00   122.00  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    0.0 0.0 24.0    0.0 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
5   ABIES AMABILIS  N   47.00   122.00  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    10.0    0.0 0.0 2.0 1.0 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
6   ABIES AMABILIS  N   46.00   121.40  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    15.0    0.0 2.0 3.0 1.0 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
7   ABIES AMABILIS  N   46.20   122.10  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    0.0 0.0 89.0    0.0 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
8   ABIES AMABILIS  N   45.40   122.00  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    20.0    0.0 1.0 6.0 0.0 0.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0
9   ABIES AMABILIS  N   45.20   121.40  -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    52.0    0.0 2.0 58.0    0.0 4.0 -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0    -1.0

#Expanded Code#
CapstoneData<-read.csv("/Users/Michael/Documents/School/Capstone/CapstoneData.csv",stringsAsFactor=F)
str(CapstoneData)
raw = list() # Create an empty list
names = list() # Create an empty list
L = list() # Create an empty list
output<-matrix(nrow=503,ncol=7)

for(i in 1:503){
  vec <-subset(CapstoneData[i,],select = Y00:Y93)
  output[i,1] <-CapstoneData$SPP[i]
  output[i,2] <-CapstoneData$SEROTINOUS[i]
  output[i,3] <-CapstoneData$LATITUDE[i]
  output[i,4] <-CapstoneData$LONGITUDE[i]

  raw[[i]] <-as.numeric(as.character(vec))
  L[[i]] <-subset(raw[[i]],raw[[i]]>0)

  output[i,5]<-round(mean(L[[i]]),2)
  output[i,6]<-(sd(L[[i]]))
  output[i,7]<-((sd(L[[i]])/mean(L[[i]])))
}
output

    #Output Results Example#
       [,1]                     [,2]   [,3]     [,4]      [,5]        [,6]                [,7]               
      [1,] "ABIES"                "N"  "53"     "122"     "2.39"      "1.30999958057203"  "0.547462511283834"
      [2,] "ABIES AMABILIS"       "N"  "48.4"   "122"     "9.67"      "5.5075705472861"   "0.569748677305459"
      .......(501 more rows not shown here)

1 个答案:

答案 0 :(得分:0)

我不确定我是否可以在没有示例数据的情况下关注您的代码,但我认为您需要接近这一点:

library(dplyr)
library(tidyr)

summary_data = 
  CapstoneData %>%
  gather(sample_number, Y, Y00:Y93) %>%
  filter(Y > 0) %>%
  group_by(SPP, SEROTINOUS, LATITUDE, LONGITUDE) %>%
  summarize(coefficient_of_variation_of_Y = sd(Y)/mean(Y))

(coefficient_of_variation_of_Y ~ LATITUDE + SEROTINOUS) %>%
  lm(summary_data) %>%
  summary