我在超级计算机中心的分配系统中安装了NetCDF，但是当我运行python文件时，它显示： ImportError：/public/home/geosign/opt/lib/python2.7/site-packages/Scientific/_netcdf.so:undefined symbol：H5P_CLS_FILE_CREATE_g
导入错误：
Traceback (most recent call last):
File "opt4.py", line 12, in <module>
from ase.calculators.jacapo import Jacapo
File "/public/home/geosign/opt/lib/python2.7/site-packages/ase/calculators/jacapo/__init__.py", line 3, in <module>
from ase.calculators.jacapo.jacapo import *
File "/public/home/geosign/opt/lib/python2.7/site-packages/ase/calculators/jacapo/jacapo.py", line 21, in <module>
from Scientific.IO.NetCDF import NetCDFFile as netCDF
File "/public/home/geosign/opt/lib/python2.7/site-packages/Scientific/IO/NetCDF.py", line 168, in <module>
from Scientific._netcdf import *
ImportError: /public/home/geosign/opt/lib/python2.7/site-packages/Scientific/_netcdf.so: undefined symbol: H5P_CLS_FILE_CREATE_g
似乎_netcdf.so无法找到HDF5的lib文件（？）如果我在没有安装zlib，HDF5或NETCDF的情况下运行作业，我会收到相同的错误消息。但是，当我安装这些软件时，没有安装错误。所有软件都配置了“--enable-share”，并考虑了LD_LIRBARARY_PATH。
当我检查_netcdf.so的ldd时，它显示： （似乎找不到hdf5的lib文件）
linux-vdso.so.1 => (0x00007fff305fd000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00002ad6970d5000)
libc.so.6 => /lib64/libc.so.6 (0x00002ad6972f1000)
/lib64/ld-linux-x86-64.so.2 (0x0000003fd0000000)
只有一件事被怀疑...... HDF5可能没有被成功编译，因为在安装它时有数百个类似的警告（但是，因为我的专业不是CS，我无法完全理解它。）
H5dbg.lo
H5dbg.c: In function 'H5_buffer_dump':
H5dbg.c:111: warning: will never be executed
H5dbg.c:113: warning: will never be executed
H5dbg.c:120: warning: will never be executed
H5dbg.c:108: warning: will never be executed
H5dbg.c:110: warning: will never be executed
H5dbg.c:118: warning: will never be executed
H5dbg.c:119: warning: will never be executed
H5dbg.c:109: warning: will never be executed
我如何配置hdf5：
./configure --prefix=/public/home/geosign/usr --enable-hl --enable-shared --with-zlib=/public/home/geosign/usr --enable-threadsafe --with-pthread=/usr
我如何配置netcdf：
CPPFLAGS=-I/public/home/geosign/usr/include LDFLAGS=-L/public/home/geosign/usr/lib ./configure --prefix=/public/home/geosign/usr --enable-netcdf-4 --enable-shared
# NetCDF C Configuration Summary
==============================
# General
-------
NetCDF Version: 4.3.3.1
Configured On: Thu Oct 22 14:48:45 CST 2015
Host System: x86_64-unknown-linux-gnu
Build Directory: /public/home/geosign/software/netcdf-4.3.3.1
Install Prefix: /public/home/geosign/usr
# Compiling Options
-----------------
C Compiler: /usr/bin/gcc
CFLAGS: -g -O2
CPPFLAGS: -I/public/home/geosign/usr/include
LDFLAGS: -L/public/home/geosign/usr/lib
AM_CFLAGS:
AM_CPPFLAGS:
AM_LDFLAGS:
Shared Library: yes
Static Library: yes
Extra libraries: -lhdf5_hl -lhdf5 -ldl -lm -lz
# Features
--------
NetCDF-2 API: yes
NetCDF-4 API: yes
HDF4 Support: no
HDF5 Support: yes
PNetCDF Support: no
Parallel Support: no
DAP Support: no
Diskless Support: yes
MMap Support: no
JNA Support: no
非常感谢！我已经工作了好几天了......太伤心了。 ：其中