#!/bin/bash
#$ -N new
#$ -q all.q
#$ -pe mpi 30
unset SGE_ROOT
/opt/mpi/1.8.1/bin/mpirun -np $NSLOTS -hostfile $TMPDIR/machines /home/abhishekb/netlogo/netlogo-5.2.0/netlogo-headless.sh \
--model /home/abhishekb/scale_med/try4.nlogo \
--experiment experiment1 \
--table /home/abhishekb/Trash/anything.csv
错误:
The: Command not found.
queuing: Command not found.
time-to-exit: Command not found.
Badly placed ()'s.
输出:
Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
--------------------------------------------------------------------------
A hostfile was provided that contains at least one node not
present in the allocation:
hostfile: /tmp/8396.1.all.q/machines
node: compute-0-1
If you are operating in a resource-managed environment, then only
nodes that are in the allocation can be used in the hostfile. You
may find relative node syntax to be a useful alternative to
specifying absolute node names see the orte_hosts man page for
further information.
--------------------------------------------------------------------------
PE文件:
rm: cannot remove `/tmp/8396.1.all.q/rsh': No such file or directory
早些时候,我曾经在下面运行:
#!/bin/bash
#$ -N new
#$ -q all.q
#$ -pe mpi 30
/home/abhishekb/netlogo/netlogo-5.2.0/netlogo-headless.sh \
--model /home/abhishekb/std_low/try4.nlogo \
--experiment experiment1 \
--table /home/abhishekb/Trash/anything.csv \
--threads 30
它只处理一个核心(在HPC端检查)虽然它抓住了30
编辑:
提交工作的文件: http://it.iiitd.edu.in/HPC_final_doc.pdf请参阅第4页和第5节第10节“工作提交步骤。
” qsub <filename.sh>