在CentOS 6.3上安装R软件包bsts失败,并在下面发生(截断)错误。我已经尝试按照建议here将GCC更新到版本4.8.2。还有其他建议吗?
- 安装源包'轰隆'...... **包装'Boom'成功解压缩并检查MD5总和 ** libs g ++ -m64 -std = c ++ 0x -I / usr / include / R -DNDEBUG -I。 -I ../ inst / include -IBmath -Imath / cephes -Icblas -DNO_BOOST_THREADS -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I / usr / local / include -I" / usr / lib64 / R / library / BH / include&# 34; -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE = 2 -fexceptions -fstack-protector -param = ssp-buffer-size = 4 -m64 -mtune = generic -c Models / Bart / Bart.cpp - o型号/ Bart / Bart.o Models / Bart / Bart.cpp:在成员函数'void BOOM :: Bart :: VariableSummary :: finalize(int, BOOM ::巴特:: ContinuousCutpointStrategy)”: Models / Bart / Bart.cpp:110:65:警告:有符号和无符号整数表达式之间的比较[-Wsign-compare] if(number_of_unique_values< observed_values_.size()){ ^ Models / Bart / Bart.cpp:117:65:警告:有符号和无符号整数表达式之间的比较[-Wsign-compare] if(number_of_unique_values< observed_values_.size()){ ^ Models / Bart / Bart.cpp:129:61:警告:有符号和无符号整数表达式之间的比较[-Wsign-compare] if(number_of_unique_values< observed_values_.size()){ ^
很多:
Models/Bart/Bart.cpp:1393:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (number_of_trees_to_remove >= trees_.size()) {
^
{standard input}: Assembler messages:
{standard input}:71: Error: expecting string instruction after `rep'
{standard input}:617: Error: expecting string instruction after `rep'
{standard input}:664: Error: expecting string instruction after `rep'
{standard input}:727: Error: expecting string instruction after `rep'
{standard input}:790: Error: expecting string instruction after `rep'
{standard input}:1171: Error: expecting string instruction after `rep'
{standard input}:1180: Error: expecting string instruction after `rep'
{standard input}:1231: Error: expecting string instruction after `rep'
{standard input}:2704: Error: expecting string instruction after `rep'
{standard input}:2796: Error: expecting string instruction after `rep'
{standard input}:7412: Error: expecting string instruction after `rep'
{standard input}:7504: Error: expecting string instruction after `rep'
{standard input}:19481: Error: expecting string instruction after `rep'
{standard input}:23959: Error: expecting string instruction after `rep'
make: *** [Models/Bart/Bart.o] Error 1
ERROR: compilation failed for package ‘Boom’
* removing ‘/usr/lib64/R/library/Boom’
ERROR: dependency ‘Boom’ is not available for package ‘BoomSpikeSlab’
* removing ‘/usr/lib64/R/library/BoomSpikeSlab’
ERROR: dependencies ‘BoomSpikeSlab’, ‘Boom’ are not available for package ‘bsts’
* removing ‘/usr/lib64/R/library/bsts’
The downloaded source packages are in
‘/tmp/Rtmpf9YQJJ/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
'/usr/lib64/R/bin/R' --vanilla CMD INSTALL \
'/tmp/Rtmpf9YQJJ/devtoolsa12a5ce5a465/google-CausalImpact-9c9286f' \
--library='/usr/lib64/R/library' --install-tests
ERROR: dependency ‘bsts’ is not available for package ‘CausalImpact’
* removing ‘/usr/lib64/R/library/CausalImpact’
Error: Command failed (1)
In addition: Warning messages:
1: In utils::install.packages(deps, dependencies = NA, Ncpus = threads) :
installation of package ‘Boom’ had non-zero exit status
2: In utils::install.packages(deps, dependencies = NA, Ncpus = threads) :
installation of package ‘BoomSpikeSlab’ had non-zero exit status
3: In utils::install.packages(deps, dependencies = NA, Ncpus = threads) :
installation of package ‘bsts’ had non-zero exit status
答案 0 :(得分:0)
在我的例子中,安装新版本(4.9)的C ++和Fortran编译器有所帮助(参见R package 'Boom' fails to install on Ubuntu linux,给Dirk Eddelbuettel提示)。我之前有4.8版,但它们没有用。
我不知道如何在CentOS上做到这一点,但我确信有可能以这种或那种方式升级编译器。 Ubuntu(14.04)的步骤是:
ubuntu-toolchain-r
添加add-apt-repository
PPA。我还使用了固定(https://help.ubuntu.com/community/PinningHowto),以便其他包不会自动从PPA更新。g++-4.9
和gfortran-4.9
。CXX=g++-4.9
或CXX1X=g++-4.9
中设置环境变量~/.R/Makevars
和/etc/R/Makeconf
。