Perl:只保留两个连续字符中的一个

时间:2015-05-22 19:29:15

标签: regex perl

我无法应用正则表达式来保留列中两个特定连续字符中的一个。我有以下文件,其中C-O出现在1号和2号,如图所示。我想写一个新文件,其中只有1号C-O存在。此功能需要在整个文件中重复,例如在2和3之间(保留编号2),编号3和4(保留编号3)等。

Input:
    1       H       27.5310
    1       H       27.0882
    1       C       36.8857
    1       O       -118.2564
    2       C       36.6954
    2       O       -118.5597
    2       N       133.6704
    2       H       28.3581

Output:
    1       H       27.5310
    1       H       27.0882
    1       C       36.8857
    1       O       -118.2564
    2       N       133.6704
    2       H       28.3581

这是我到目前为止所希望的,希望我的逻辑是半清晰的。我还在学习,非常感谢任何评论!

#!/usr/bin/perl

use strict;
use warnings;

my $file = 'data.txt';

open my $fh, '<', $file or die "Can't read $file: $!";

while (my $line = <fh>) {
    chomp $line;
    my @column = split(/\t/,$line);
    if ($column[1] =~ s/COCO/\s+/g) {
    print "@columns\n";
   }
 }

1 个答案:

答案 0 :(得分:1)

你可以一次完成这一切。将整个文件读成字符串 然后通过这个正则表达式。

 # s/(?m)(^\h+(\d+)\h+C.*\s+^\h+\2\h+O.*\n)\s*^\h+(?!\2)(\d+)\h+C.*\s+^\h+\3\h+O.*\n(?!\s*\z)/$1/g

 (?xm-)
 # C-O in the bottom of a segment
 (                             # (1 start), Keep this
      ^ \h+                         # new line
      ( \d+ )                       # (2), col 1 number
      \h+ C .* \s+                  # C
      ^ \h+                         # next line
      \2 \h+ O .* \n                # \2 .. O 
 )                             # (1 end)
 # Throw this away
 # C-O in the top of next segment
 \s* 
 ^ \h+                         # new line
 (?! \2 )                      # Not \2
 ( \d+ )                       # (3), col 1 num
 \h+ C .* \s+                  # C
 ^ \h+                         # next line
 \3 \h+ O .* \n                # \3 .. O
 (?! \s* \z )                  # Not the last in file

Perl代码:

use strict;
use warnings;

$/ = "";

my $input = <DATA>;
print "Input:\n$input\n";

$input =~

 s/(?xm-)
     # C-O in the bottom of a segment
     (                             # (1 start), Keep this
          ^ \h+                         # new line
          ( \d+ )                       # (2), col 1 number
          \h+ C .* \s+                  # C
          ^ \h+                         # next line
          \2 \h+ O .* \n                # \2 .. O 
     )                             # (1 end)
     # Throw this away
     # C-O in the top of next segment
     \s* 
     ^ \h+                         # new line
     (?! \2 )                      # Not \2
     ( \d+ )                       # (3), col 1 num
     \h+ C .* \s+                  # C
     ^ \h+                         # next line
     \3 \h+ O .* \n                # \3 .. O
     (?! \s* \z )                  # Not the last in file
/$1/g;

print "Output:\n$input\n";

__DATA__
    1       H       27.5310
    1       H       27.0882
    1       C       36.8857
    1       O       -118.2564
    2       C       36.6954
    2       O       -118.5597
    2       N       133.6704
    2       H       28.3581

代码输出:

Input:
    1       H       27.5310
    1       H       27.0882
    1       C       36.8857
    1       O       -118.2564
    2       C       36.6954
    2       O       -118.5597
    2       N       133.6704
    2       H       28.3581

Output:
    1       H       27.5310
    1       H       27.0882
    1       C       36.8857
    1       O       -118.2564
    2       N       133.6704
    2       H       28.3581