R:没有forloop

时间:2015-05-13 16:08:56

标签: r for-loop data.table dplyr split-apply-combine

我有97M行的长表。每行包含一个人采取的操作的信息以及该操作的时间戳,格式为:

actions <- c("walk","sleep", "run","eat")
people <- c("John","Paul","Ringo","George")
timespan <- seq(1000,2000,1)

set.seed(28100)
df.in <- data.frame(who = sample(people, 10, replace=TRUE),
                    what = sample(actions, 10, replace=TRUE),
                    when = sample(timespan, 10, replace=TRUE))

df.in
#       who  what when
# 1    Paul   eat 1834
# 2    Paul sleep 1295
# 3    Paul   eat 1312
# 4   Ringo   eat 1635
# 5    John sleep 1424
# 6  George   run 1092
# 7    Paul  walk 1849
# 8    John   run 1854
# 9  George sleep 1036
# 10  Ringo  walk 1823

每个人都可以采取或不采取任何行动,并且可以按照任何顺序采取行动。

我有兴趣总结我的数据集中的操作顺序。特别是对于每个人,我想找到哪个动作是第一,第二,第三和第四。 如果多次采取行动,我只对第一次出现感兴趣。然后,如果有人跑步,吃饭,吃饭,跑步和睡觉,我有兴趣总结一下,如runeatsleep

df.out <- data.frame(who = factor(character(), levels=people),
                     action1 = factor(character(), levels=actions),
                     action2 = factor(character(), levels=actions),
                     action3 = factor(character(), levels=actions),
                     action4 = factor(character(), levels=actions))

我可以用forloop获得我想要的东西:

for (person in people) {
  tmp <- subset(df.in, who==person)
  tmp <- tmp[order(tmp$when),]
  chrono_list <- unique(tmp$what)
  df.out <- rbind(df.out, data.frame(who = person,
                                     action1 = chrono_list[1],
                                     action2 = chrono_list[2],
                                     action3 = chrono_list[3],
                                     action4 = chrono_list[4]))
}

df.out
#        who action1 action2 action3 action4
#   1   John   sleep     run    <NA>    <NA>
#   2   Paul   sleep     eat    walk    <NA>
#   3  Ringo     eat    walk    <NA>    <NA>
#   4 George   sleep     run    <NA>    <NA>

是否可以在没有循环的情况下以更有效的方式获得此结果?

4 个答案:

答案 0 :(得分:5)

我们可以使用dcast的开发版本中的data.table,即。 v1.9.5。我们可以从here

安装它
library(data.table)#v1.9.5+
dcast(setDT(df.in)[order(when),action:= paste0('action', 1:.N) ,who],
                           who~action, value.var='what')

如果您需要unique'为每个'谁''提供什么'

dcast(setDT(df.in)[, .SD[!duplicated(what)], who][order(when),
    action:= paste0('action', 1:.N), who], who~action, value.var='what')
#         who action1 action2 action3
#1: George   sleep     run      NA
#2:   John   sleep     run      NA
#3:   Paul   sleep     eat    walk
#4:  Ringo     eat    walk      NA

使用.I会更快一些

 ind <- setDT(df.in)[,.I[!duplicated(what)], who]$V1 

 dcast(df.in[ind][order(when),action:= paste0('action', 1:.N) ,who], 
            who~action, value.var='what')

或者使用setorderunique,这可能是一个有效的内存,因为setorder可以通过引用对数据集进行重新排序。

 dcast(unique(setorder(setDT(df.in), who, when), by=c('who', 'what'))[,
     action:= paste0('action', 1:.N), who], who~action, value.var='what')
 #     who action1 action2 action3
 #1: George   sleep     run      NA
 #2:   John   sleep     run      NA
 #3:   Paul   sleep     eat    walk
 #4:  Ringo     eat    walk      NA

答案 1 :(得分:3)

您还可以使用组合dplyr + tidyr

library(dplyr)
library(tidyr)

df.in %>%
  group_by(who) %>%
  mutate(when = rank(when), when = paste0("action", when)) %>%
  spread(key = when, value = what)
 ##      who action1 action2 action3 action4
 ## 1 George   sleep     run      NA      NA
 ## 2   John   sleep     run      NA      NA
 ## 3   Paul   sleep     eat     eat    walk
 ## 4  Ringo     eat    walk      NA      NA

修改

如果您只需要what列的第一个出现,您可以先过滤数据

df.in %>%
  arrange(when) %>%
  group_by(who) %>%
  filter(!duplicated(what)) %>%
  mutate(when = rank(when), when = paste0("action", when)) %>%
  spread(key = when, value = what)
##      who action1 action2 action3
## 1 George   sleep     run      NA
## 2   John   sleep     run      NA
## 3   Paul   sleep     eat    walk
## 4  Ringo     eat    walk      NA

答案 2 :(得分:0)

我看到你已经标记了plyr,但你也可以使用dplyr执行此操作。像下面这样的东西应该有效:

df.in %>%
    group_by(who) %>%
    arrange(when) %>%
    summarise(action1 = first(what),
              action2 = nth(what, 2),
              action3 = nth(what, 3),
              action4 = last(what))

答案 3 :(得分:0)

这是一种使用更传统的split-apply-combine的方法。虽然{dplyr}和{data.table}解决方案似乎比这种类型的{base} R解决方案更常见,但它比for循环更具惯用性R代码。此方法使用来自{reshape2}的dcast,但它也可以将reshape()用于纯{base} R解决方案。

此方法可能没有问题中给出的for循环快得多。我有兴趣知道给出的三种方法如何比较大型数据集。我是初学者,最近一直致力于学习R数据操作。欢迎任何反馈。

library(reshape2)

#Split the data by person and apply the function
actions <- lapply(split(df.in, df.in$who), function(tmp) {

    tmp <- tmp[order(tmp$when),]
    dup <- duplicated(tmp$what)
    df.out <- data.frame(who = tmp$who[!dup], what = tmp$what[!dup])
    df.out$actionNo <- paste("action", c(1:nrow(df.out)), sep = "")
    return(df.out)

})

#Combine the results
act_rbind <- do.call(rbind, actions)
act_cast <- dcast(act_rbind, who ~ actionNo, value.var = "what")
print(act_cast)

    #      who action1 action2 action3
    # 1 George   sleep     run    <NA>
    # 2   John   sleep     run    <NA>
    # 3   Paul   sleep     eat    walk
    # 4  Ringo     eat    walk    <NA>