ClassNotFoundException在修改后的SimpleShortestPathsVertex上运行GiraphRunner

时间：2014-08-01 16:23:15

标签： java hadoop classpath classnotfoundexception giraph

我对Giraph来说相对较新，我试图让我的Giraph edit-compile-deploy循环适用于我们的代码。我可以运行受http://blog.cloudera.com/blog/2014/02/how-to-write-and-run-giraph-jobs-on-hadoop/启发的各种示例，但在运行SimpleShortestPathsVertex Giraph示例的修改版本时，我遇到了ClassNotFoundException。我尝试过各种-libjars和HADOOP_CLASSPATH的组合，但我没有想法，我非常感谢你的帮助。详情如下。

版本

  • Hadoop：Hadoop 2.0.0-cdh4.4.0
  • Giraph：giraph-examples-1.0.0-for-hadoop-2.0.0-alpha-jar-with-dependencies.jar

PageRankBenchmark运行正常

$ hadoop jar $GIRAPH_HOME/giraph-examples/target/giraph-examples-1.0.0-for-hadoop-2.0.0-alpha-jar-with-dependencies.jar \
org.apache.giraph.benchmark.PageRankBenchmark \
-Dgiraph.zkList=<myhost>:2181 \
-e 1 -s 3 -v -V 50 -w 1

...
14/08/01 11:42:44 INFO mapred.JobClient: Job complete: job_201407291058_0015
...
(full output is below)

GiraphRunner SimpleShortestPathsVertex也运行正常

$ hadoop jar $GIRAPH_HOME/giraph-examples/target/giraph-examples-1.0.0-for-hadoop-2.0.0-alpha-jar-with-dependencies.jar \
org.apache.giraph.GiraphRunner \
-Dgiraph.zkList=<myhost>:2181 \
org.apache.giraph.examples.SimpleShortestPathsVertex \
-vif org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat \
-vip ginput/tiny_graph.txt \
-of org.apache.giraph.io.formats.IdWithValueTextOutputFormat \
-op goutput/shortestpathsC2 \
-ca SimpleShortestPathsVertex.source=2 \
-w 1

...
14/08/01 11:47:46 INFO mapred.JobClient: Job complete: job_201407291058_0017
...
(full output is below)

奖金：结果是正确的：

$ hadoop fs -cat goutput/shortestpathsC2/p*
0   1.0
2   2.0
1   0.0
3   1.0
4   5.0

但我修改后的SimpleShortestPathsVertex版本获取ClassNotFoundException

包含修改过的顶点的jar（KdlSimpleShortestPathsVertex，没有包）没问题：

$ jar -tf ~/kdl_hadoop_play.jar
META-INF/MANIFEST.MF
KdlSimpleShortestPathsVertex.class
META-INF/

但我的奔跑呕吐：

$ hadoop jar $GIRAPH_HOME/giraph-core/target/giraph-1.0.0-for-hadoop-2.0.0-alpha-jar-with-dependencies.jar \
org.apache.giraph.GiraphRunner \
-Dgiraph.zkList=<myhost>:2181 \
-libjars ~/kdl_hadoop_play.jar \
KdlSimpleShortestPathsVertex \
-vif org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat \
-vip /user/cornell/ginput/tiny_graph.txt \
-of org.apache.giraph.io.formats.IdWithValueTextOutputFormat \
-op /user/cornell/goutput/shortestpathsC2 \
-ca KdlSimpleShortestPathsVertex.source=2 \
-w 1

Exception in thread "main" java.lang.ClassNotFoundException: KdlSimpleShortestPathsVertex
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:190)
at org.apache.giraph.utils.ConfigurationUtils.populateGiraphConfiguration(ConfigurationUtils.java:210)
at org.apache.giraph.utils.ConfigurationUtils.parseArgs(ConfigurationUtils.java:147)
at org.apache.giraph.GiraphRunner.run(GiraphRunner.java:74)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84)
at org.apache.giraph.GiraphRunner.main(GiraphRunner.java:124)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.main(RunJar.java:208)

我最好的猜测......

...环顾四周后，GiraphRunner可能没有正确处理-libjars，正如http://grepalex.com/2013/02/25/hadoop-libjars/暗示的那样（＆＃34;确保您的代码使用的是GenericOptionsParser＆＃34;）。浏览Giraph源代码，我没有看到该类访问过。我尝试将HADOOP_CLASSPATH设置为我的jar，但这并没有解决问题。

任何帮助都会很棒！

PageRankBenchmark输出

14/08/01 11:42:27 INFO job.GiraphJob: run: Since checkpointing is disabled (default), do not allow any task retries (setting mapred.map.max.attempts = 0, old value = 4)
14/08/01 11:42:28 WARN mapred.JobClient: Use GenericOptionsParser for parsing the arguments. Applications should implement Tool for the same.
14/08/01 11:42:28 WARN bsp.BspOutputFormat: checkOutputSpecs: ImmutableOutputCommiter will not check anything
14/08/01 11:42:29 INFO mapred.JobClient: Running job: job_201407291058_0015
14/08/01 11:42:30 INFO mapred.JobClient:  map 0% reduce 0%
14/08/01 11:42:40 INFO mapred.JobClient:  map 50% reduce 0%
14/08/01 11:42:41 INFO mapred.JobClient:  map 100% reduce 0%
14/08/01 11:42:44 INFO mapred.JobClient: Job complete: job_201407291058_0015
14/08/01 11:42:44 INFO mapred.JobClient: Counters: 39
14/08/01 11:42:44 INFO mapred.JobClient:   File System Counters
14/08/01 11:42:44 INFO mapred.JobClient:     FILE: Number of bytes read=0
14/08/01 11:42:44 INFO mapred.JobClient:     FILE: Number of bytes written=369846
14/08/01 11:42:44 INFO mapred.JobClient:     FILE: Number of read operations=0
14/08/01 11:42:44 INFO mapred.JobClient:     FILE: Number of large read operations=0
14/08/01 11:42:44 INFO mapred.JobClient:     FILE: Number of write operations=0
14/08/01 11:42:44 INFO mapred.JobClient:     HDFS: Number of bytes read=88
14/08/01 11:42:44 INFO mapred.JobClient:     HDFS: Number of bytes written=0
14/08/01 11:42:44 INFO mapred.JobClient:     HDFS: Number of read operations=2
14/08/01 11:42:44 INFO mapred.JobClient:     HDFS: Number of large read operations=0
14/08/01 11:42:44 INFO mapred.JobClient:     HDFS: Number of write operations=1
14/08/01 11:42:44 INFO mapred.JobClient:   Job Counters 
14/08/01 11:42:44 INFO mapred.JobClient:     Launched map tasks=2
14/08/01 11:42:44 INFO mapred.JobClient:     Total time spent by all maps in occupied slots (ms)=15772
14/08/01 11:42:44 INFO mapred.JobClient:     Total time spent by all reduces in occupied slots (ms)=0
14/08/01 11:42:44 INFO mapred.JobClient:     Total time spent by all maps waiting after reserving slots (ms)=0
14/08/01 11:42:44 INFO mapred.JobClient:     Total time spent by all reduces waiting after reserving slots (ms)=0
14/08/01 11:42:44 INFO mapred.JobClient:   Map-Reduce Framework
14/08/01 11:42:44 INFO mapred.JobClient:     Map input records=2
14/08/01 11:42:44 INFO mapred.JobClient:     Map output records=0
14/08/01 11:42:44 INFO mapred.JobClient:     Input split bytes=88
14/08/01 11:42:44 INFO mapred.JobClient:     Spilled Records=0
14/08/01 11:42:44 INFO mapred.JobClient:     CPU time spent (ms)=2230
14/08/01 11:42:44 INFO mapred.JobClient:     Physical memory (bytes) snapshot=411357184
14/08/01 11:42:44 INFO mapred.JobClient:     Virtual memory (bytes) snapshot=2428895232
14/08/01 11:42:44 INFO mapred.JobClient:     Total committed heap usage (bytes)=806027264
14/08/01 11:42:44 INFO mapred.JobClient:   Giraph Stats
14/08/01 11:42:44 INFO mapred.JobClient:     Aggregate edges=50
14/08/01 11:42:44 INFO mapred.JobClient:     Aggregate finished vertices=50
14/08/01 11:42:44 INFO mapred.JobClient:     Aggregate vertices=50
14/08/01 11:42:44 INFO mapred.JobClient:     Current master task partition=0
14/08/01 11:42:44 INFO mapred.JobClient:     Current workers=1
14/08/01 11:42:44 INFO mapred.JobClient:     Last checkpointed superstep=0
14/08/01 11:42:44 INFO mapred.JobClient:     Sent messages=0
14/08/01 11:42:44 INFO mapred.JobClient:     Superstep=4
14/08/01 11:42:44 INFO mapred.JobClient:   Giraph Timers
14/08/01 11:42:44 INFO mapred.JobClient:     Input superstep (milliseconds)=238
14/08/01 11:42:44 INFO mapred.JobClient:     Setup (milliseconds)=2903
14/08/01 11:42:44 INFO mapred.JobClient:     Shutdown (milliseconds)=68
14/08/01 11:42:44 INFO mapred.JobClient:     Superstep 0 (milliseconds)=77
14/08/01 11:42:44 INFO mapred.JobClient:     Superstep 1 (milliseconds)=64
14/08/01 11:42:44 INFO mapred.JobClient:     Superstep 2 (milliseconds)=45
14/08/01 11:42:44 INFO mapred.JobClient:     Superstep 3 (milliseconds)=43
14/08/01 11:42:44 INFO mapred.JobClient:     Total (milliseconds)=3442

SimpleShortestPathsVertex输出

14/08/01 11:47:37 INFO utils.ConfigurationUtils: No edge input format specified. Ensure your InputFormat does not require one.
14/08/01 11:47:37 INFO utils.ConfigurationUtils: Setting custom argument [SimpleShortestPathsVertex.source] to [2] in GiraphConfiguration
14/08/01 11:47:37 WARN job.GiraphConfigurationValidator: Output format vertex index type is not known
14/08/01 11:47:37 WARN job.GiraphConfigurationValidator: Output format vertex value type is not known
14/08/01 11:47:37 WARN job.GiraphConfigurationValidator: Output format edge value type is not known
14/08/01 11:47:37 INFO job.GiraphJob: run: Since checkpointing is disabled (default), do not allow any task retries (setting mapred.map.max.attempts = 0, old value = 4)
14/08/01 11:47:37 WARN mapred.JobClient: Use GenericOptionsParser for parsing the arguments. Applications should implement Tool for the same.
14/08/01 11:47:38 INFO mapred.JobClient: Running job: job_201407291058_0017
14/08/01 11:47:39 INFO mapred.JobClient:  map 0% reduce 0%
14/08/01 11:47:44 INFO mapred.JobClient:  map 50% reduce 0%
14/08/01 11:47:45 INFO mapred.JobClient:  map 100% reduce 0%
14/08/01 11:47:46 INFO mapred.JobClient: Job complete: job_201407291058_0017
14/08/01 11:47:46 INFO mapred.JobClient: Counters: 39
14/08/01 11:47:46 INFO mapred.JobClient:   File System Counters
14/08/01 11:47:46 INFO mapred.JobClient:     FILE: Number of bytes read=0
14/08/01 11:47:46 INFO mapred.JobClient:     FILE: Number of bytes written=367068
14/08/01 11:47:46 INFO mapred.JobClient:     FILE: Number of read operations=0
14/08/01 11:47:46 INFO mapred.JobClient:     FILE: Number of large read operations=0
14/08/01 11:47:46 INFO mapred.JobClient:     FILE: Number of write operations=0
14/08/01 11:47:46 INFO mapred.JobClient:     HDFS: Number of bytes read=200
14/08/01 11:47:46 INFO mapred.JobClient:     HDFS: Number of bytes written=30
14/08/01 11:47:46 INFO mapred.JobClient:     HDFS: Number of read operations=5
14/08/01 11:47:46 INFO mapred.JobClient:     HDFS: Number of large read operations=0
14/08/01 11:47:46 INFO mapred.JobClient:     HDFS: Number of write operations=2
14/08/01 11:47:46 INFO mapred.JobClient:   Job Counters 
14/08/01 11:47:46 INFO mapred.JobClient:     Launched map tasks=2
14/08/01 11:47:46 INFO mapred.JobClient:     Total time spent by all maps in occupied slots (ms)=8538
14/08/01 11:47:46 INFO mapred.JobClient:     Total time spent by all reduces in occupied slots (ms)=0
14/08/01 11:47:46 INFO mapred.JobClient:     Total time spent by all maps waiting after reserving slots (ms)=0
14/08/01 11:47:46 INFO mapred.JobClient:     Total time spent by all reduces waiting after reserving slots (ms)=0
14/08/01 11:47:46 INFO mapred.JobClient:   Map-Reduce Framework
14/08/01 11:47:46 INFO mapred.JobClient:     Map input records=2
14/08/01 11:47:46 INFO mapred.JobClient:     Map output records=0
14/08/01 11:47:46 INFO mapred.JobClient:     Input split bytes=88
14/08/01 11:47:46 INFO mapred.JobClient:     Spilled Records=0
14/08/01 11:47:46 INFO mapred.JobClient:     CPU time spent (ms)=1590
14/08/01 11:47:46 INFO mapred.JobClient:     Physical memory (bytes) snapshot=341344256
14/08/01 11:47:46 INFO mapred.JobClient:     Virtual memory (bytes) snapshot=2363527168
14/08/01 11:47:46 INFO mapred.JobClient:     Total committed heap usage (bytes)=504758272
14/08/01 11:47:46 INFO mapred.JobClient:   Giraph Stats
14/08/01 11:47:46 INFO mapred.JobClient:     Aggregate edges=12
14/08/01 11:47:46 INFO mapred.JobClient:     Aggregate finished vertices=5
14/08/01 11:47:46 INFO mapred.JobClient:     Aggregate vertices=5
14/08/01 11:47:46 INFO mapred.JobClient:     Current master task partition=0
14/08/01 11:47:46 INFO mapred.JobClient:     Current workers=1
14/08/01 11:47:46 INFO mapred.JobClient:     Last checkpointed superstep=0
14/08/01 11:47:46 INFO mapred.JobClient:     Sent messages=0
14/08/01 11:47:46 INFO mapred.JobClient:     Superstep=4
14/08/01 11:47:46 INFO mapred.JobClient:   Giraph Timers
14/08/01 11:47:46 INFO mapred.JobClient:     Input superstep (milliseconds)=181
14/08/01 11:47:46 INFO mapred.JobClient:     Setup (milliseconds)=313
14/08/01 11:47:46 INFO mapred.JobClient:     Shutdown (milliseconds)=128
14/08/01 11:47:46 INFO mapred.JobClient:     Superstep 0 (milliseconds)=57
14/08/01 11:47:46 INFO mapred.JobClient:     Superstep 1 (milliseconds)=54
14/08/01 11:47:46 INFO mapred.JobClient:     Superstep 2 (milliseconds)=36
14/08/01 11:47:46 INFO mapred.JobClient:     Superstep 3 (milliseconds)=35
14/08/01 11:47:46 INFO mapred.JobClient:     Total (milliseconds)=805

2 个答案:

答案 0 :(得分：2)

好的，看完hadoop脚本以及Hadoop和Giraph源后，我想我已经明白了。大提示来自Using the libjars option with Hadoop以及输出中的这一行：

  

WARN mapred.JobClient：使用GenericOptionsParser解析   参数。应用程序应该实现相同的工具。

原因似乎是GiraphRunner使用自己的ConfigurationUtils.parseArgs（）来获取org.apache.commons.cli.CommandLine而不是使用推荐的org.apache.hadoop.util.GenericOptionsParser.getCommandLine（），尊重'libjars'选项。这让我回到了Hadoop的通用类路径处理工具：CLASSPATH和/或HADOOP_CLASSPATH。这是有效的：

  • 使用冒号分隔符设置HADOOP_CLASSPATH以包含应用程序jar 和 gigraph核心jar。
  • 使用相同的类路径传递-libjars，但使用逗号分隔符。

例如，在我的机器上：

$ export GIRAPH_HOME=/share/apps/giraph
$ export HADOOP_CLASSPATH=/home/<me>/kdl_hadoop_play.jar:$GIRAPH_HOME/giraph-ex.jar:$HADOOP_CLASSPATH
$ export LIBJARS=/home/<me>/kdl_hadoop_play.jar,$GIRAPH_HOME/giraph-core.jar
$ hadoop fs -rm -R goutput/shortestpathsC2
$ hadoop jar $GIRAPH_HOME/giraph-ex.jar org.apache.giraph.GiraphRunner \
-Dgiraph.zkList=<myhost>:2181 \
-libjars ${LIBJARS} \
KdlSimpleShortestPathsVertex \
-vif org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat \
-vip /user/cornell/ginput/tiny_graph.txt \
-of org.apache.giraph.io.formats.IdWithValueTextOutputFormat \
-op /user/cornell/goutput/shortestpathsC2 \
-ca SimpleShortestPathsVertex.source=2 \
-w 1
...
$ hadoop fs -cat goutput/shortestpathsC2/p*

它给出了预期的输出和结果。

更一般地说，如果Giraph团队更改代码以使用（显然）更标准的解析器，将会很有帮助。

希望有所帮助！

答案 1 :(得分：0)

我不知道为什么这不起作用，但有一种快速而肮脏的方法来解决这个问题。尝试将代码放在giraph-examples/src/main/java/org/apache/giraph/examples/目录（SimpleShortestPath所在的目录）中。然后运行mvn -DskipTests --projects giraph-examples --also-make package来构建giraph-examples jar。然后只需像运行SimpleShortestPath一样运行程序，用文件名替换SimpleShortestPath。 我希望有所帮助。

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