Question

代码有什么问题？

  public static void main(String[] args) throws Exception{


    ArrayList<String> fileName = new ArrayList<String> ();
    fileName.add("2M3T.fasta.txt");
    fileName.add("3LWK.fasta.txt");
    ArrayList<ProteinSequence> al = new ArrayList<ProteinSequence>();
    ArrayList<ProteinSequence> all =  new ArrayList<ProteinSequence>();
    for (String fn : fileName)
    {
    al = getProteinSequenceFromFasta(fn);
    all.add(al.get(0));
    for  (ProteinSequence s : al)
    {
        System.out.println(s);
    }
    }
    Profile<ProteinSequence, AminoAcidCompound> profile = Alignments.getMultipleSequenceAlignment(all);
    System.out.printf("Clustalw:%n%s%n", profile);
    ConcurrencyTools.shutdown();
    }
    //for (int i=0;i<sequence.size();i++)
    //  System.out.println(sequence);


public static ArrayList<ProteinSequence> getProteinSequenceFromFasta(String file) throws Exception{

    LinkedHashMap<String, ProteinSequence> a = FastaReaderHelper.readFastaProteinSequence(new File(file));
    //sztuczne
    ArrayList<ProteinSequence> sequence =  new ArrayList<ProteinSequence>(a.values());


    return sequence;
}

}

GSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMYILPQGEYPEYQRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE SMSAGPWKMVVWDEDGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQYILERGEYPSWDAWGGNTAYPAERLTSFRPAACANHRDSRLTIFEQENFLGKKGELSDDYPSLQAMGWEGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAPTFQVQSIRRIQQ 线程“main”中的异常java.lang.NoSuchMethodError：org.forester.phylogeny.PhylogenyNode.addAsChild（Lorg / forester / phylogeny / PhylogenyNode;）V 在org.forester.evoinference.distance.NeighborJoining.execute（NeighborJoining.java:127）在org.biojava3.alignment.GuideTree。（GuideTree.java:88）在org.biojava3.alignment.Alignments.getMultipleSequenceAlignment（Alignments.java:183）在Fasta.main（Fasta.java:42）

Answer 1

问题是您使用的是错误版本的林务员。

根据Maven pom文件，Biojava 3.08依赖于forester 1.005，而它的谷歌代码页上最新版本的forester是1.028。

从Biojava maven存储库获取jar也可能更好，以确保使用正确的版本。

从此网址下载jar：

http://biojava.org/download/maven/org/forester/1.005/

biojava线程“main”中的异常java.lang.NoSuchMethodError：

1 个答案: