来自bash脚本的输出文件夹

Question

我有bash脚本：

 for x in *.bam; 
do  bamToBed -i $x > ${x%.bam}.bed; 
done

但我不知道如何设置.bed文件的输出文件夹（从脚本输出）。

Answer 1

## Define the folder you want to use for .bed files
outputFolder=/your/output/folder
## Make sure the folder is created
mkdir -p "$outputFolder"

for x in *.bam; do
    ## Redirect the output to a file in the above defined folder
    bamToBed -i "$x" > "$outputFolder/${x%.bam}.bed"
done