我正在阅读http://www.uk.sagepub.com/books/Book233417,Rcmdr
用于将罗西数据http://cran.r-project.org/doc/contrib/Fox-Companion/Rossi.txt从宽到长转换为时变生存分析。
进行转换的Rcmdr
脚本是:
.CovSets <-structure(list(covariate.1 = c("emp1", "emp2", "emp3", "emp4", "emp5", "emp6", "emp7", "emp8", "emp9", "emp10", "emp11", "emp12", "emp13", "emp14", "emp15", "emp16", "emp17", "emp18", "emp19", "emp20", "emp21", "emp22", "emp23", "emp24", "emp25", "emp26", "emp27", "emp28", "emp29","emp30", "emp31", "emp32", "emp33", "emp34", "emp35", "emp36", "emp37", "emp38", "emp39", "emp40", "emp41", "emp42", "emp43", "emp44", "emp45", "emp46", "emp47", "emp48", "emp49", "emp50", "emp51", "emp52")), .Names = "covariate.1")
Rossi.long <- unfold(Rossi, time="week", event="arrest", cov=.CovSets,
cov.names=c("covariate.1"))
remove(.CovSets)
但是,如果未加载Rcmdr
,则此脚本无法运行。
Rcmdr脚本的结果转换了
中的Rossi数据帧> head(Rossi,20)
week arrest fin age race wexp mar paro prio educ emp1 emp2 emp3 emp4 emp5 emp6 emp7 emp8 emp9 emp10 emp11 emp12 emp13 emp14 emp15 emp16 emp17 emp18 emp19 emp20 emp21 emp22 emp23 emp24 emp25
1 20 1 0 27 1 0 0 1 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 NA NA NA NA NA
2 17 1 0 18 1 0 0 1 8 4 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 NA NA NA NA NA NA NA NA
3 25 1 0 19 0 1 0 1 13 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
4 52 0 1 23 1 1 1 1 1 5 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0
5 52 0 0 19 0 1 0 1 3 3 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
6 52 0 0 24 1 1 0 0 2 4 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1
7 23 1 0 25 1 1 1 1 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 NA NA
8 52 0 1 21 1 1 0 1 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1
9 52 0 0 22 1 0 0 0 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0
10 52 0 0 20 1 1 0 0 0 5 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
11 52 0 1 26 1 0 0 1 3 3 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0
12 52 0 0 40 1 1 0 0 2 5 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
13 37 1 0 17 1 1 0 1 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
14 52 0 0 37 1 1 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1
15 25 1 0 20 1 0 0 1 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 0 0
16 46 1 1 22 1 1 0 1 2 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
17 28 1 0 19 1 0 0 0 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0
18 52 0 0 20 1 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1
19 52 0 0 25 1 0 0 1 12 3 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0
20 52 0 0 24 0 1 0 1 1 3 0 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1
emp26 emp27 emp28 emp29 emp30 emp31 emp32 emp33 emp34 emp35 emp36 emp37 emp38 emp39 emp40 emp41 emp42 emp43 emp44 emp45 emp46 emp47 emp48 emp49 emp50 emp51 emp52 id
1 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1
2 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2
3 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3
4 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4
5 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
6 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
7 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7
8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8
9 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9
10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10
11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 11
12 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12
13 0 0 1 1 0 0 0 0 0 0 0 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13
14 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14
15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15
16 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 NA NA NA NA NA NA 16
17 0 0 0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17
18 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18
19 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19
20 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20
到Rossi.long数据
> head(Rossi.long,30)
start stop arrest.time week arrest fin age race wexp mar paro prio educ id covariate.1
1.1 0 1 0 20 1 0 27 1 0 0 1 3 3 1 0
1.2 1 2 0 20 1 0 27 1 0 0 1 3 3 1 0
1.3 2 3 0 20 1 0 27 1 0 0 1 3 3 1 0
1.4 3 4 0 20 1 0 27 1 0 0 1 3 3 1 0
1.5 4 5 0 20 1 0 27 1 0 0 1 3 3 1 0
1.6 5 6 0 20 1 0 27 1 0 0 1 3 3 1 0
1.7 6 7 0 20 1 0 27 1 0 0 1 3 3 1 0
1.8 7 8 0 20 1 0 27 1 0 0 1 3 3 1 0
1.9 8 9 0 20 1 0 27 1 0 0 1 3 3 1 0
1.10 9 10 0 20 1 0 27 1 0 0 1 3 3 1 0
1.11 10 11 0 20 1 0 27 1 0 0 1 3 3 1 0
1.12 11 12 0 20 1 0 27 1 0 0 1 3 3 1 0
1.13 12 13 0 20 1 0 27 1 0 0 1 3 3 1 0
1.14 13 14 0 20 1 0 27 1 0 0 1 3 3 1 0
1.15 14 15 0 20 1 0 27 1 0 0 1 3 3 1 0
1.16 15 16 0 20 1 0 27 1 0 0 1 3 3 1 0
1.17 16 17 0 20 1 0 27 1 0 0 1 3 3 1 0
1.18 17 18 0 20 1 0 27 1 0 0 1 3 3 1 0
1.19 18 19 0 20 1 0 27 1 0 0 1 3 3 1 0
1.20 19 20 1 20 1 0 27 1 0 0 1 3 3 1 0
2.1 0 1 0 17 1 0 18 1 0 0 1 8 4 2 0
2.2 1 2 0 17 1 0 18 1 0 0 1 8 4 2 0
2.3 2 3 0 17 1 0 18 1 0 0 1 8 4 2 0
2.4 3 4 0 17 1 0 18 1 0 0 1 8 4 2 0
2.5 4 5 0 17 1 0 18 1 0 0 1 8 4 2 0
2.6 5 6 0 17 1 0 18 1 0 0 1 8 4 2 0
2.7 6 7 0 17 1 0 18 1 0 0 1 8 4 2 0
2.8 7 8 0 17 1 0 18 1 0 0 1 8 4 2 0
2.9 8 9 0 17 1 0 18 1 0 0 1 8 4 2 0
2.10 9 10 0 17 1 0 18 1 0 0 1 8 4 2 1
是否可以使用reshape
或任何其他数据转换包执行此精确转换?
更新:Rcmdr
脚本只能在Rcmdr
答案 0 :(得分:2)
'展开'功能位于此处(如您链接到的pdf中所述:
http://socserv.mcmaster.ca/jfox/Books/Companion/scripts/appendix-cox.R
脚本不需要Rcmdr。它需要car
(反过来会加载MASS
和nnet
但是如果你有Rcmdr那么你必须有car
)并且加载survival
这是{{1}}推荐的包装,应该可以在所有安装中使用。它在R 3.0.0 beta中运行完成且没有错误,我强烈怀疑它将在R 2.15.x中完成。