Question

我通过API从在线数据库（REDcap）获取数据，数据以逗号分隔的字符串形式传递，

RAW.API <- structure("id,event_arm,name,dob,pushed_text,pushed_calc,complete\n\"01\",\"event_1_arm_1\",\"John\",\"1979-05-01\",\"\",\"\",2\n\"01\",\"event_2_arm_1\",\"John\",\"2012-09-02\",\"abc\",\"123\",1\n\"01\",\"event_3_arm_1\",\"John\",\"2012-09-10\",\"\",\"\",2\n\"02\",\"event_1_arm_1\",\"Mary\",\"1951-09-10\",\"def\",\"456\",2\n\"02\",\"event_2_arm_1\",\"Mary\",\"1978-09-12\",\"\",\"\",2\n", "`Content-Type`" = structure(c("text/html", "utf-8"), .Names = c("", "charset")))

我有这个脚本可以很好地将其解析为数据框，

(df <- read.table(file = textConnection(RAW.API), header = TRUE, 
sep = ",", na.strings = "", stringsAsFactors = FALSE))
  id     event_arm name        dob pushed_text pushed_calc complete
1  1 event_1_arm_1 John 1979-05-01        <NA>          NA        2
2  1 event_2_arm_1 John 2012-09-02         abc         123        1
3  1 event_3_arm_1 John 2012-09-10        <NA>          NA        2
4  2 event_1_arm_1 Mary 1951-09-10         def         456        2
5  2 event_2_arm_1 Mary 1978-09-12        <NA>          NA        2

然后我做了一些计算并将它们写入pushed_text和pushed_calc，然后我需要将数据格式化回它所带来的凌乱的逗号分隔结构。

我想象这样的事情，

API.back <- `some magic command`(df, ...)

identical(RAW.API, API.back)
[1] TRUE

某些命令可以将我的数据格式从我创建的数据框df格式化回原始API对象所带来的结构RAW.API。

非常感谢任何帮助。

Answer 1

这似乎有效：

some_magic <- function(df) {
    ## Replace NA with "", converting column types as needed
    df[] <- lapply(df, function(X) {
                if(any(is.na(X))) {X[is.na(X)] <- ""; X} else {X}
            })

    ## Print integers in first column as 2-digit character strings
    ## (DO NOTE: Hardwiring the number of printed digits here is probably
    ## inadvisable, though needed to _exactly_ reconstitute RAW.API.) 
    df[[1]] <- sprintf("%02.0f", df[[1]])

    ## Separately build header and table body, then suture them together 
    l1 <- paste(names(df), collapse=",")
    l2 <- capture.output(write.table(df, sep=",", col.names=FALSE, 
                                     row.names=FALSE))
    out <- paste0(c(l1, l2, ""), collapse="\n")

    ## Reattach attributes
    att <- list("`Content-Type`" = structure(c("text/html", "utf-8"), 
                .Names = c("", "charset")))
    attributes(out) <- att
    out
}

identical(some_magic(df), RAW.API)
# [1] TRUE

解析'凌乱'的API结构

1 个答案: