Question

我在geneplotter（Bioconductor包）安装期间。我在Linux Mint 9上使用R 2.14。我认为命名空间对此负责，但我不知道如何修复它......

这是错误：

> source("http://bioconductor.org/biocLite.R")
> biocLite("geneplotter")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.0.
Installing package(s) 'geneplotter'
Installing package(s) into ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
essai de l'URL 'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/geneplotter_1.31.4.tar.gz'
Content type 'application/x-gzip' length 1387616 bytes (1.3 Mb)
URL ouverte
==================================================
downloaded 1.3 Mb

* installing *source* package ‘geneplotter’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘byChroms.Rnw’ 
   ‘visualize.Rnw’ 
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) : 
  undefined exports: .__C__file, .__C__connection
Erreur : le chargement a échoué
Exécution arrêtée
ERREUR : le chargement a échoué
* removing ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14/geneplotter’

The downloaded packages are in
    ‘/tmp/RtmpO1aY1T/downloaded_packages’
Message d'avis :
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package ‘geneplotter’ had non-zero exit status

提前致谢，

<磷>氮

Answer 1

更密切地研究这一点，geneplotter failed to build用于初始版本。所以你拿到的版本是倒数第二个版本。您确定的问题昨天已得到纠正，及时进行下一个构建周期。 geneplotter正确构建时可能正确安装，可能是在中午PDT;寻找版本1.32.1。回想起来不是一个SO问题; Bioconductor mailing list有post facility，不需要订阅。

geneplotter安装错误

1 个答案: