运行conda下载的qtl seq命令时出现错误。我正在运行以下命令

时间:2019-10-10 07:16:53

标签: python-3.x

devtools::install_github("stevecondylios/rawr")
library(rawr)
rawr("https://www.kaggle.com/vrtjso/mercari-eda-more-info-than-you-can-imagine", to_file=T)

回溯(最近通话最近一次):

[QTL-seq:2019-10-09 09:13:37] !!ERROR!! bcftools concat -a -O z -o Chikpea_qtl/30_vcf/qtlseq.vcf.gz Chikpea_qtl/30_vcf/qtlseq.*.vcf.gz >> Chikpea_qtl/log/bcftools.log 2>&1
Failed to open Chikpea_qtl/30_vcf/qtlseq.NW_004516646.1.vcf.gz: could not load index

check = True)

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 191, in concat

output = stdout,stderr = stderr)

File "/home/jthakur/anaconda2/lib/python3.6/subprocess.py", line 438, in run

文件“ / home / jthakur / anaconda2 / bin / qtlseq”,第11行,在 load_entry_point('qtlseq','console_scripts','qtlseq')()

subprocess.CalledProcessError: Command 'bcftools concat -a -O z -o Chikpea_qtl/30_vcf/qtlseq.vcf.gz Chikpea_qtl/30_vcf/qtlseq.*.vcf.gz >> Chikpea_qtl/log/bcftools.log 2>&1' returned non-zero exit status 255.
Traceback (most recent call last):

QTLseq(args).run()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/qtlseq.py", line 192, in main

mp.run()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/qtlseq.py", line 123, in mpileup

self.concat()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 232, in run

sys.exit()

File "/home/jthakur/Desktop/Software/QTL-seq/qtlseq/mpileup.py", line 194, in concat

0 个答案:

没有答案