重新排列相关矩阵图的轴标签

时间:2019-09-09 22:09:24

标签: r matrix ggplot2 pearson-correlation ggcorrplot

我正在使用ggcorrplot构建相关矩阵,但是输出以我不希望的方式对列进行重新排序。如何重新排列列?

就本示例而言,我将使用R中的'mtcars'数据集。生成最终输出后,我需要对列进行重新排序,因为它会不断重新排序为我不喜欢的格式想要。

注意:网站提供的代码如下:http://www.sthda.com/english/wiki/ggplot2-quick-correlation-matrix-heatmap-r-software-and-data-visualization

library(ggcorrplot)

mydata <- mtcars

#correlation matrix
cormat <- round(cor(mydata),2)

library(reshape2)
melted_cormat <- melt(cormat)
head(melted_cormat)

library(ggplot2)
ggplot(data = melted_cormat, aes(x=Var1, y=Var2, fill=value)) + 
  geom_tile()

# Get upper triangle of the correlation matrix
get_upper_tri <- function(cormat){
  cormat[lower.tri(cormat)]<- NA
  return(cormat)
}

upper_tri <- get_upper_tri(cormat)

# Melt the correlation matrix
library(reshape2)
melted_cormat <- melt(upper_tri, na.rm = TRUE)
# Heatmap
library(ggplot2)
ggplot(data = melted_cormat, aes(Var2, Var1, fill = value))+
  geom_tile(color = "white")+
  scale_fill_gradient2(low = "blue", high = "red", mid = "white", 
                       midpoint = 0, limit = c(-1,1), space = "Lab", 
                       name="Pearson\nCorrelation") +
  theme_minimal()+ 
  theme(axis.text.x = element_text(angle = 45, vjust = 1, 
                                   size = 12, hjust = 1))+
  coord_fixed()

这是我想要的相关矩阵,但是我需要将列重新排序为不同于所示的顺序。

任何帮助都会很棒。谢谢大家!

1 个答案:

答案 0 :(得分:2)

假设我们希望x-axis以其名称(labels)的字母顺序排列,而y-axis则相同,但顺序相反。以下代码有效(其余代码相同)。

ggplot(data = melted_cormat, aes(reorder(Var2,  -desc(as.character(Var2))), 
                                 reorder(Var1,  desc(as.character(Var1))), fill = value))+
  geom_tile(color = "white")+
  scale_fill_gradient2(low = "blue", high = "red", mid = "white", 
                       midpoint = 0, limit = c(-1,1), space = "Lab", 
                       name="Pearson\nCorrelation") +
  theme_minimal()+ 
  theme(axis.text.x = element_text(angle = 45, vjust = 1, 
                                   size = 12, hjust = 1))+
  coord_fixed()