R Package Doesn't Install in Jupyter Notebook, But Installs in RStudio and R app

时间:2017-04-08 22:28:50

标签: r jupyter-notebook r-package

I'm trying to install the package PerformanceAnalytics using the following code in a Jupyter Notebook, which I've used to install many packages successfully, such as ggplot2, with the following code:

install.packages("PerformanceAnalytics", repos='http://cran.r-project.org')

But I read on many other questions that adding dependencies=TRUE would solve the issue. Unfortunately, it did not. I keep getting the following error message.

install.packages("PerformanceAnalytics", repos='http://cran.r-project.org', 
dependencies=TRUE)

Warning message in install.packages("PerformanceAnalytics", repos = 
"http://cran.r-project.org"): “installation of package ‘PerformanceAnalytics’ 
had non-zero exit status”Updating HTML index of packages in '.Library'
Making 'packages.html' ... done

The package installs without a problem in the R app and RStudio. Is there something I'm missing that Jupyter requires for this specific package? I'm using macOS 10.12.5. Below is the info when I run sessionInfo().

R version 3.3.2 (2016-10-31)
Platform: x86_64-apple-darwin11.4.2 (64-bit)
Running under: macOS Sierra 10.12.5

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] R6_2.2.0        magrittr_1.5    IRdisplay_0.4.4 pbdZMQ_0.2-4   
 [5] tools_3.3.2     crayon_1.3.2    uuid_0.1-2      stringi_1.1.2  
 [9] IRkernel_0.7.1  jsonlite_1.1    stringr_1.1.0   digest_0.6.10  
[13] repr_0.10       evaluate_0.10  

1 个答案:

答案 0 :(得分:1)

Is it possible to install bioconductor package 'rain' in R Jupyter notebook?问题的解决方案也解决了我的问题。我使用的是Anaconda版本的R.我卸载了Anaconda,而是手动安装了Jupyter Notebook和IRkernal,解决了我的问题。有关详细信息,请参阅上述链接的答案。