我有一个基因列表作为我的eset的行名,如:
iDs <- head(rownames(eset))
[1] "LGI1" "ATE1" "NELL1" "CCND1" "FADD" "PPFIA1" "ORAOV1" "FOXN4" "NOVA1" "PTGER2" "GPX2" "DLK1"
[13] "ZG16" "MYH2" "NPTX1"
如何在R?
中找到这些基因的GO信息(更具体:功能)这是我的解决方案,但我不确定我是否做得对:
library (biomaRt)
mart = useMart("ensembl", dataset="hsapiens_gene_ensembl")
getGene( id = iDs[1] , type = "hgnc_symbol", mart = mart)
hgnc_symbol hgnc_symbol description chromosome_name
1 LGI1 LGI1 leucine-rich, glioma inactivated 1 [Source:HGNC Symbol;Acc:HGNC:6572] 10
band strand start_position end_position ensembl_gene_id
1 q23.33 1 93757809 93798174 ENSG00000108231
正如我之前提到的,我想要的是找出这些基因的功能而不是描述或它们的位置?
任何帮助将不胜感激。 谢谢,