tf.contrib.data.Dataset似乎不支持SparseTensor

时间：2017-10-09 16:35:40

标签： tensorflow tensorflow-datasets

我使用tensorflow对象检测API中的代码生成了pascal voc 2007 tfrecords文件。我使用tf.contrib.data.Dataset API从tfrecords中读取数据。我在没有tf.contrib.data.Dataset API的情况下尝试了mehtod，代码可以正常运行，但是当更改为tf.contrib.data.Dataset API时，它无法正常运行。

没有tf.contrib.data.Dataset的代码：

import tensorflow as tf

if __name__ == '__main__':
    slim_example_decoder = tf.contrib.slim.tfexample_decoder

    features = {"image/height": tf.FixedLenFeature((), tf.int64, default_value=1),
                "image/width": tf.FixedLenFeature((), tf.int64, default_value=1),
                "image/filename": tf.FixedLenFeature((), tf.string, default_value=""),
                "image/source_id": tf.FixedLenFeature((), tf.string, default_value=""),
                "image/key/sha256": tf.FixedLenFeature((), tf.string, default_value=""),
                "image/encoded": tf.FixedLenFeature((), tf.string, default_value=""),
                "image/format": tf.FixedLenFeature((), tf.string, default_value="jpeg"),
                "image/object/bbox/xmin": tf.VarLenFeature(tf.float32),
                "image/object/bbox/xmax": tf.VarLenFeature(tf.float32),
                "image/object/bbox/ymin": tf.VarLenFeature(tf.float32),
                "image/object/bbox/ymax": tf.VarLenFeature(tf.float32),
                "image/object/class/text": tf.VarLenFeature(tf.string),
                "image/object/class/label": tf.VarLenFeature(tf.int64),
                "image/object/difficult": tf.VarLenFeature(tf.int64),
                "image/object/truncated": tf.VarLenFeature(tf.int64),
                "image/object/view": tf.VarLenFeature(tf.int64)}
    items_to_handlers = {
        'image': slim_example_decoder.Image(
            image_key='image/encoded', format_key='image/format', channels=3),
        'source_id': (
            slim_example_decoder.Tensor('image/source_id')),
        'key': (
            slim_example_decoder.Tensor('image/key/sha256')),
        'filename': (
            slim_example_decoder.Tensor('image/filename')),
        # Object boxes and classes.
        'groundtruth_boxes': (
            slim_example_decoder.BoundingBox(
                ['ymin', 'xmin', 'ymax', 'xmax'], 'image/object/bbox/')),
        'groundtruth_classes': (
            slim_example_decoder.Tensor('image/object/class/label')),
        'groundtruth_difficult': (
            slim_example_decoder.Tensor('image/object/difficult')),
        'image/object/truncated': (
            slim_example_decoder.Tensor('image/object/truncated')),
        'image/object/view': (
            slim_example_decoder.Tensor('image/object/view')),
    }
    decoder = slim_example_decoder.TFExampleDecoder(features, items_to_handlers)
    keys = decoder.list_items()
    for example in tf.python_io.tf_record_iterator(
          "/home/aurora/workspaces/data/tfrecords_data/oxford_pet/pet_train.record"):
        serialized_example = tf.reshape(example, shape=[])
        tensors = decoder.decode(serialized_example, items=keys)
        tensor_dict = dict(zip(keys, tensors))
        tensor_dict['image'].set_shape([None, None, 3])
        print(tensor_dict)

上述代码的输出是：

{'image': <tf.Tensor 'case/If_1/Merge:0' shape=(?, ?, 3) dtype=uint8>,
 'filename': <tf.Tensor 'Reshape_2:0' shape=() dtype=string>,
 'groundtruth_boxes': <tf.Tensor 'transpose:0' shape=(?, 4) dtype=float32>,
 'key': <tf.Tensor 'Reshape_5:0' shape=() dtype=string>,
 'image/object/truncated': <tf.Tensor 'SparseToDense:0' shape=(?,) dtype=int64>,
 'groundtruth_classes': <tf.Tensor 'SparseToDense_2:0' shape=(?,) dtype=int64>,
 'image/object/view': <tf.Tensor 'SparseToDense_1:0' shape=(?,) dtype=int64>,
 'source_id': <tf.Tensor 'Reshape_6:0' shape=() dtype=string>,
 'groundtruth_difficult': <tf.Tensor 'SparseToDense_3:0' shape=(?,) dtype=int64>}
...

代码tf.contrib.data.Dataset：

import tensorflow as tf
from tensorflow.contrib.data import Iterator

slim_example_decoder = tf.contrib.slim.tfexample_decoder

flags = tf.app.flags
flags.DEFINE_string('data_dir',
  '/home/aurora/workspaces/data/tfrecords_data/voc_dataset/trainval.tfrecords',
  'tfrecords file output path')
flags.DEFINE_integer('batch_size', 32, 'training batch size')
flags.DEFINE_integer('capacity', 10000, 'training batch size')
FLAGS = flags.FLAGS

features = {"image/height": tf.FixedLenFeature((), tf.int64, default_value=1),
        "image/width": tf.FixedLenFeature((), tf.int64, default_value=1),
        "image/filename": tf.FixedLenFeature((), tf.string, default_value=""),
        "image/source_id": tf.FixedLenFeature((), tf.string, default_value=""),
        "image/key/sha256": tf.FixedLenFeature((), tf.string, default_value=""),
        "image/encoded": tf.FixedLenFeature((), tf.string, default_value=""),
        "image/format": tf.FixedLenFeature((), tf.string, default_value="jpeg"),
        "image/object/bbox/xmin": tf.VarLenFeature(tf.float32),
        "image/object/bbox/xmax": tf.VarLenFeature(tf.float32),
        "image/object/bbox/ymin": tf.VarLenFeature(tf.float32),
        "image/object/bbox/ymax": tf.VarLenFeature(tf.float32),
        "image/object/class/text": tf.VarLenFeature(tf.string),
        "image/object/class/label": tf.VarLenFeature(tf.int64),
        "image/object/difficult": tf.VarLenFeature(tf.int64),
        "image/object/truncated": tf.VarLenFeature(tf.int64),
        "image/object/view": tf.VarLenFeature(tf.int64)
      }

items_to_handlers = {
    'image': slim_example_decoder.Image(
        image_key='image/encoded', format_key='image/format', channels=3),
    'source_id': (
        slim_example_decoder.Tensor('image/source_id')),
    'key': (
        slim_example_decoder.Tensor('image/key/sha256')),
    'filename': (
        slim_example_decoder.Tensor('image/filename')),
    # Object boxes and classes.
    'groundtruth_boxes': (
        slim_example_decoder.BoundingBox(
            ['ymin', 'xmin', 'ymax', 'xmax'], 'image/object/bbox/')),
    'groundtruth_classes': (
        slim_example_decoder.Tensor('image/object/class/label')),
    'groundtruth_difficult': (
        slim_example_decoder.Tensor('image/object/difficult')),
    'image/object/truncated': (
        slim_example_decoder.Tensor('image/object/truncated')),
    'image/object/view': (
        slim_example_decoder.Tensor('image/object/view')),
    }
decoder = slim_example_decoder.TFExampleDecoder(features, items_to_handlers)
keys = decoder.list_items()


def _parse_function_train(example):
  serialized_example = tf.reshape(example, shape=[])
  tensors = decoder.decode(serialized_example, items=keys)
  tensor_dict = dict(zip(keys, tensors))
  tensor_dict['image'].set_shape([None, None, 3])
  print(tensor_dict)
  return tensor_dict


if __name__ == '__main__':
    train_dataset = tf.contrib.data.TFRecordDataset(FLAGS.data_dir)
    train_dataset = train_dataset.map(_parse_function_train)
    train_dataset = train_dataset.repeat(1)
    train_dataset = train_dataset.batch(FLAGS.batch_size)
    train_dataset = train_dataset.shuffle(buffer_size=FLAGS.capacity)
    iterator = Iterator.from_structure(train_dataset.output_types,
                                   train_dataset.output_shapes)
    next_element = iterator.get_next()
    training_init_op = iterator.make_initializer(train_dataset)

    sess = tf.Session()
    sess.run(training_init_op)
    counter = 0
    while True:
        try:
            sess.run(next_element)
            counter += 1
        except tf.errors.OutOfRangeError:
            print('End of training data in step %d' %counter)
            break

运行上述代码时，会报告以下错误：

2017-10-09 23:41:43.488439: W tensorflow/core/framework/op_kernel.cc:1192]     Invalid argument: Name: <unknown>, Key: image/object/view, Index: 0.  Data types don't match. Expected type: int64
2017-10-09 23:41:43.488554: W tensorflow/core/framework/op_kernel.cc:1192] Invalid argument: Name: <unknown>, Key: image/object/view, Index: 0.  Data types don't match. Expected type: int64
 [[Node: ParseSingleExample/ParseExample/ParseExample = ParseExample[Ndense=7, Nsparse=9, Tdense=[DT_STRING, DT_STRING, DT_STRING, DT_INT64, DT_STRING, DT_STRING, DT_INT64], dense_shapes=[[], [], [], [], [], [], []], sparse_types=[DT_FLOAT, DT_FLOAT, DT_FLOAT, DT_FLOAT, DT_INT64, DT_STRING, DT_INT64, DT_INT64, DT_INT64]](ParseSingleExample/ExpandDims, ParseSingleExample/ParseExample/ParseExample/names, ParseSingleExample/ParseExample/ParseExample/sparse_keys_0, ParseSingleExample/ParseExample/ParseExample/sparse_keys_1, ParseSingleExample/ParseExample/ParseExample/sparse_keys_2, ParseSingleExample/ParseExample/ParseExample/sparse_keys_3, ParseSingleExample/ParseExample/ParseExample/sparse_keys_4, ParseSingleExample/ParseExample/ParseExample/sparse_keys_5, ParseSingleExample/ParseExample/ParseExample/sparse_keys_6, ParseSingleExample/ParseExample/ParseExample/sparse_keys_7, ParseSingleExample/ParseExample/ParseExample/sparse_keys_8, ParseSingleExample/ParseExample/ParseExample/dense_keys_0, ParseSingleExample/ParseExample/ParseExample/dense_keys_1, ParseSingleExample/ParseExample/ParseExample/dense_keys_2, ParseSingleExample/ParseExample/ParseExample/dense_keys_3, ParseSingleExample/ParseExample/ParseExample/dense_keys_4, ParseSingleExample/ParseExample/ParseExample/dense_keys_5, ParseSingleExample/ParseExample/ParseExample/dense_keys_6, ParseSingleExample/ParseExample/Reshape, ParseSingleExample/ParseExample/Reshape_1, ParseSingleExample/ParseExample/Reshape_2, ParseSingleExample/ParseExample/Reshape_3, ParseSingleExample/ParseExample/Reshape_4, ParseSingleExample/ParseExample/Reshape_5, ParseSingleExample/ParseExample/Reshape_6)]]
Traceback (most recent call last):
  File "/usr/software/anaconda3/lib/python3.5/site-packages/tensorflow/python/client/session.py", line 1327, in _do_call
return fn(*args)
  File "/usr/software/anaconda3/lib/python3.5/site-packages/tensorflow/python/client/session.py", line 1306, in _run_fn
status, run_metadata)
  File "/usr/software/anaconda3/lib/python3.5/contextlib.py", line 66, in __exit__
next(self.gen)
  File "/usr/software/anaconda3/lib/python3.5/site-packages/tensorflow/python/framework/errors_impl.py", line 466, in raise_exception_on_not_ok_status
pywrap_tensorflow.TF_GetCode(status))
tensorflow.python.framework.errors_impl.InvalidArgumentError: Name: <unknown>, Key: image/object/view, Index: 0.  Data types don't match. Expected type: int64
 [[Node: ParseSingleExample/ParseExample/ParseExample = ParseExample[Ndense=7, Nsparse=9, Tdense=[DT_STRING, DT_STRING, DT_STRING, DT_INT64, DT_STRING, DT_STRING, DT_INT64], dense_shapes=[[], [], [], [], [], [], []], sparse_types=[DT_FLOAT, DT_FLOAT, DT_FLOAT, DT_FLOAT, DT_INT64, DT_STRING, DT_INT64, DT_INT64, DT_INT64]](ParseSingleExample/ExpandDims, ParseSingleExample/ParseExample/ParseExample/names, ParseSingleExample/ParseExample/ParseExample/sparse_keys_0, ParseSingleExample/ParseExample/ParseExample/sparse_keys_1, ParseSingleExample/ParseExample/ParseExample/sparse_keys_2, ParseSingleExample/ParseExample/ParseExample/sparse_keys_3, ParseSingleExample/ParseExample/ParseExample/sparse_keys_4, ParseSingleExample/ParseExample/ParseExample/sparse_keys_5, ParseSingleExample/ParseExample/ParseExample/sparse_keys_6, ParseSingleExample/ParseExample/ParseExample/sparse_keys_7, ParseSingleExample/ParseExample/ParseExample/sparse_keys_8, ParseSingleExample/ParseExample/ParseExample/dense_keys_0, ParseSingleExample/ParseExample/ParseExample/dense_keys_1, ParseSingleExample/ParseExample/ParseExample/dense_keys_2, ParseSingleExample/ParseExample/ParseExample/dense_keys_3, ParseSingleExample/ParseExample/ParseExample/dense_keys_4, ParseSingleExample/ParseExample/ParseExample/dense_keys_5, ParseSingleExample/ParseExample/ParseExample/dense_keys_6, ParseSingleExample/ParseExample/Reshape, ParseSingleExample/ParseExample/Reshape_1, ParseSingleExample/ParseExample/Reshape_2, ParseSingleExample/ParseExample/Reshape_3, ParseSingleExample/ParseExample/Reshape_4, ParseSingleExample/ParseExample/Reshape_5, ParseSingleExample/ParseExample/Reshape_6)]]
 [[Node: IteratorGetNext = IteratorGetNext[output_shapes=[[?], [?,?,4], [?,?], [?,?], [?,?,?,3], [?,?], [?,?], [?], [?]], output_types=[DT_STRING, DT_FLOAT, DT_INT64, DT_INT64, DT_UINT8, DT_INT64, DT_INT64, DT_STRING, DT_STRING], _device="/job:localhost/replica:0/task:0/cpu:0"](Iterator)]]

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/aurora/workspaces/PycharmProjects/object_detection_models/datasets/voc_dataset/voc_tfrecords_decode_test.py", line 83, in <module>
sess.run(next_element)
  File "/usr/software/anaconda3/lib/python3.5/site-packages/tensorflow/python/client/session.py", line 895, in run
run_metadata_ptr)
  File "/usr/software/anaconda3/lib/python3.5/site-packages/tensorflow/python/client/session.py", line 1124, in _run
feed_dict_tensor, options, run_metadata)
  File "/usr/software/anaconda3/lib/python3.5/site-packages/tensorflow/python/client/session.py", line 1321, in _do_run
options, run_metadata)
  File "/usr/software/anaconda3/lib/python3.5/site-packages/tensorflow/python/client/session.py", line 1340, in _do_call
raise type(e)(node_def, op, message)
tensorflow.python.framework.errors_impl.InvalidArgumentError: Name: <unknown>, Key: image/object/view, Index: 0.  Data types don't match. Expected type: int64
 [[Node: ParseSingleExample/ParseExample/ParseExample = ParseExample[Ndense=7, Nsparse=9, Tdense=[DT_STRING, DT_STRING, DT_STRING, DT_INT64, DT_STRING, DT_STRING, DT_INT64], dense_shapes=[[], [], [], [], [], [], []], sparse_types=[DT_FLOAT, DT_FLOAT, DT_FLOAT, DT_FLOAT, DT_INT64, DT_STRING, DT_INT64, DT_INT64, DT_INT64]](ParseSingleExample/ExpandDims, ParseSingleExample/ParseExample/ParseExample/names, ParseSingleExample/ParseExample/ParseExample/sparse_keys_0, ParseSingleExample/ParseExample/ParseExample/sparse_keys_1, ParseSingleExample/ParseExample/ParseExample/sparse_keys_2, ParseSingleExample/ParseExample/ParseExample/sparse_keys_3, ParseSingleExample/ParseExample/ParseExample/sparse_keys_4, ParseSingleExample/ParseExample/ParseExample/sparse_keys_5, ParseSingleExample/ParseExample/ParseExample/sparse_keys_6, ParseSingleExample/ParseExample/ParseExample/sparse_keys_7, ParseSingleExample/ParseExample/ParseExample/sparse_keys_8, ParseSingleExample/ParseExample/ParseExample/dense_keys_0, ParseSingleExample/ParseExample/ParseExample/dense_keys_1, ParseSingleExample/ParseExample/ParseExample/dense_keys_2, ParseSingleExample/ParseExample/ParseExample/dense_keys_3, ParseSingleExample/ParseExample/ParseExample/dense_keys_4, ParseSingleExample/ParseExample/ParseExample/dense_keys_5, ParseSingleExample/ParseExample/ParseExample/dense_keys_6, ParseSingleExample/ParseExample/Reshape, ParseSingleExample/ParseExample/Reshape_1, ParseSingleExample/ParseExample/Reshape_2, ParseSingleExample/ParseExample/Reshape_3, ParseSingleExample/ParseExample/Reshape_4, ParseSingleExample/ParseExample/Reshape_5, ParseSingleExample/ParseExample/Reshape_6)]]
 [[Node: IteratorGetNext = IteratorGetNext[output_shapes=[[?], [?,?,4], [?,?], [?,?], [?,?,?,3], [?,?], [?,?], [?], [?]], output_types=[DT_STRING, DT_FLOAT, DT_INT64, DT_INT64, DT_UINT8, DT_INT64, DT_INT64, DT_STRING, DT_STRING], _device="/job:localhost/replica:0/task:0/cpu:0"](Iterator)]]

生成tfrecords文件的代码可以引用create_pascal_tf_record.py。

2 个答案:

答案 0 :(得分：4)

编辑（2018/01/25）： tf.SparseTensor支持已添加到TensorFlow 1.5中的tf.data。问题中的代码应该在TensorFlow 1.5或更高版本中有效。

在TF 1.4之前，tf.contrib.data API不支持数据集元素中的tf.SparseTensor个对象。有几种解决方法：

  1. （更难，但可能更快。）如果tf.SparseTensor对象st代表可变长度的要素列表，您可以返回{来自st.values函数的{1}}而不是st。请注意，您可能需要使用Dataset.padded_batch()代替Dataset.batch()来填充结果。

  2. （更简单，但可能更慢。）在map()函数中，迭代_parse_function_train()并生成任何tensor_dict个对象的新版本已使用tf.serialize_sparse()转换为tf.SparseTensor。当你

    tf.Tensor

    然后，在您从# NOTE: You could probably infer these from `keys`. sparse_keys = set() def _parse_function_train(example): serialized_example = tf.reshape(example, shape=[]) tensors = decoder.decode(serialized_example, items=keys) tensor_dict = dict(zip(keys, tensors)) tensor_dict['image'].set_shape([None, None, 3]) rewritten_tensor_dict = {} for key, value in tensor_dict.items(): if isinstance(value, tf.SparseTensor): rewritten_tensor_dict[key] = tf.serialize_sparse(value) sparse_keys.add(key) else: rewritten_tensor_dict[key] = value return rewritten_tensor_dict 获取next_element字典后，您可以使用tf.deserialize_many_sparse()撤消此转化：

    iterator.get_next()

答案 1 :(得分：1)

除了tf.SparseTensor之外，还有tf.scatter_nd 似乎可以达到相同的效果，但您可能需要稍后恢复索引。

这两个代码块实现了相同的结果

indices = tf.concat([xy_indices, z_indices], axis=-1)
values  = tf.concat([bboxes, objectness, one_hot], axis=1)

SparseTensor = tf.SparseTensor(indices= indices,
                               values = values, 
                               dense_shape =[output_size, output_size,
                                            len(anchors), 4 + 1 + num_classes])

DenseTensor = tf.scatter_nd(indices = indices,
                            updates = values
                            shape   = [output_size, output_size,
                                       len(anchors),4 + 1 + num_classes])
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